Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq735 102 2e-16
seq69 84.2 5e-11
>seq735
Length=25462
Score = 102 bits (112), Expect = 2e-16
Identities = 256/383 (67%), Gaps = 12/383 (3%)
Strand=Plus/Plus
Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060
|||||||||||||||||| | || ||||| || || || |||||||| || || | ||
Sbjct 11886 CTTCCTCATTTGCTTTTCTATGGACCTCCAGGCACTGGAAAGACGTCCACGATTGTAGCT 11945
Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAA---CATGAGAGAGCGCGTGCTCGAGCTGAAC 254117
||| || || || ||| || || || | ||| | | |||||||||
Sbjct 11946 GTGGGGCGTCAACTCTTTGGCTCGGATTTTCGCAAGAATGGTCGCTTCTTAGAGCTGAAC 12005
Query 254118 GCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTC-CAAGAT 254176
|| || || || || || | | || || || || ||| |||| | ||| | ||||
Sbjct 12006 GCGTCAGATGACCGGGGCATTAAGGTGGTGCGGGAAAAGGTCAAAAGCTTCGCTCAAGGA 12065
Query 254177 GTCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGC 254236
| | || || ||| | ||| || ||||| ||| || | | || ||||||||
Sbjct 12066 GCCA--TTAGTACCGCCAGC--GGCCTCCCCCCTTTTAAGATCATTGTGCTAGACGAGGC 12121
Query 254237 GGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGT 254296
||| | ||||| | ||||| ||||| || | || || | |||||||| ||||
Sbjct 12122 CGACTCGATGACAGGGGACGCACAGTCGGCATTGCGTCGCATGATGGAGAATTACTCTAA 12181
Query 254297 TGTGACGCGTTTTTGCCTGGTGTGCAACTACGTG--TCGAAGATCATCGCCCCGCTGGCT 254354
|| |||||||| || || | || ||||||||| ||| | |||||| || ||||
Sbjct 12182 GGTCACGCGTTTCTGTCTAATTTGTAACTACGTGAGTCGTA--TCATCGAGCCCGTGGCC 12239
Query 254355 TCTCGGTGCGCCAAGTTTCGATT 254377
|| || || ||||||||||| ||
Sbjct 12240 TCGCGATGTGCCAAGTTTCGCTT 12262
>seq69
Length=63067
Score = 84.2 bits (92), Expect = 5e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303
|| || | |||| ||||||| |||| | ||||| |||||||| ||||| ||||| ||
Sbjct 13407 ACACCAGCCTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTCGTCTTGCCCTGAAGC 13348
Query 157304 GAAATCATGTCCATCCACTCGAATGGGTT 157332
|| |||||||||||||| || ||||||||
Sbjct 13347 GAGATCATGTCCATCCAGTCAAATGGGTT 13319
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073638687902144
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |