Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq735 102 2e-16 seq69 84.2 5e-11 >seq735 Length=25462 Score = 102 bits (112), Expect = 2e-16 Identities = 256/383 (67%), Gaps = 12/383 (3%) Strand=Plus/Plus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 |||||||||||||||||| | || ||||| || || || |||||||| || || | || Sbjct 11886 CTTCCTCATTTGCTTTTCTATGGACCTCCAGGCACTGGAAAGACGTCCACGATTGTAGCT 11945 Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAA---CATGAGAGAGCGCGTGCTCGAGCTGAAC 254117 ||| || || || ||| || || || | ||| | | ||||||||| Sbjct 11946 GTGGGGCGTCAACTCTTTGGCTCGGATTTTCGCAAGAATGGTCGCTTCTTAGAGCTGAAC 12005 Query 254118 GCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTC-CAAGAT 254176 || || || || || || | | || || || || ||| |||| | ||| | |||| Sbjct 12006 GCGTCAGATGACCGGGGCATTAAGGTGGTGCGGGAAAAGGTCAAAAGCTTCGCTCAAGGA 12065 Query 254177 GTCGATTTCGTCGTTCCAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGC 254236 | | || || ||| | ||| || ||||| ||| || | | || |||||||| Sbjct 12066 GCCA--TTAGTACCGCCAGC--GGCCTCCCCCCTTTTAAGATCATTGTGCTAGACGAGGC 12121 Query 254237 GGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGT 254296 ||| | ||||| | ||||| ||||| || | || || | |||||||| |||| Sbjct 12122 CGACTCGATGACAGGGGACGCACAGTCGGCATTGCGTCGCATGATGGAGAATTACTCTAA 12181 Query 254297 TGTGACGCGTTTTTGCCTGGTGTGCAACTACGTG--TCGAAGATCATCGCCCCGCTGGCT 254354 || |||||||| || || | || ||||||||| ||| | |||||| || |||| Sbjct 12182 GGTCACGCGTTTCTGTCTAATTTGTAACTACGTGAGTCGTA--TCATCGAGCCCGTGGCC 12239 Query 254355 TCTCGGTGCGCCAAGTTTCGATT 254377 || || || ||||||||||| || Sbjct 12240 TCGCGATGTGCCAAGTTTCGCTT 12262 >seq69 Length=63067 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 157244 ACCCCGGGCTTGCTGTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGA 157303 || || | |||| ||||||| |||| | ||||| |||||||| ||||| ||||| || Sbjct 13407 ACACCAGCCTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTCGTCTTGCCCTGAAGC 13348 Query 157304 GAAATCATGTCCATCCACTCGAATGGGTT 157332 || |||||||||||||| || |||||||| Sbjct 13347 GAGATCATGTCCATCCAGTCAAATGGGTT 13319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073638687902144