Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq478 109 1e-18 seq1773 84.2 4e-11 >seq478 Length=29740 Score = 109 bits (120), Expect = 1e-18 Identities = 304/453 (67%), Gaps = 14/453 (3%) Strand=Plus/Plus Query 35333 ATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCA 35392 |||||| ||| ||||| ||||| || | ||||||||||||| ||| | | | Sbjct 15158 ATCTGGGACGGCAATGGATCGCGTGAGTACCTGGACAGTAGAGGCTTACAGTCACGGGAG 15217 Query 35393 GAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGAT 35452 | ||||| | ||||| ||||| || ||||| ||||||||||| ||||| | || Sbjct 15218 GTAGGAGACCTTGGACCAGTATATGGTTTCCAGTGGCGTCATTTCGGTGCAAAGTACACC 15277 Query 35453 -ACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGAC 35511 || || | |||| ||||| || | || | || || | || | | || | | Sbjct 15278 GACATGCA-TGCCGACTATACAGGCCAAGGCGTGGACCAGCTCGCTGAGGTGATACACAA 15336 Query 35512 CCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCT 35571 || | ||| || |||| | | || | || |||| |||||||| ||||| Sbjct 15337 ACTCCGGACAAACCCTTCTGATCGCCGTATCGTGCTGTCGGCCTGGAATCCGGCTGATCT 15396 Query 35572 TCACCTTATGGCTCTTCCTCCATGCCACATGA-CTGCTCAATTTTATGTGGCTAATGGAG 35630 | | ||||| || || || ||||||||| ||| ||| ||||| || ||| | || | Sbjct 15397 TAATGACATGGCGCTGCCGCCGTGCCACATGTTCTG-TCAGTTTTACGTAGCTGACGGTG 15455 Query 35631 AATTGTCGTGCCAGTTGTATCAGCG--AAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAA 35688 | |||||||||||| |||| ||||| ||| || ||| ||| | ||||| || ||||| Sbjct 15456 AGTTGTCGTGCCAGATGTACCAGCGCTCAGCTGACATG--GGGCTCGGCGTCCCATTCAA 15513 Query 35689 TATTGCATCATACTCTCTTCTGACTCATCTGATGGC-CAGTATGGTGGGTCTAAAACCGG 35747 ||| || ||| | || || || | | |||| ||| ||| ||| | ||||| | Sbjct 15514 TATCGCCAGCTACGCGCTGCTAACGCGCTTAGTGGCACAG-GTGGCAGGTTTGAAACCCG 15572 Query 35748 GAGAGTTTATCCTCA-CTC-TTGGTGACGCACA 35778 | |||||||| ||| || |||||||||| || Sbjct 15573 GCGAGTTTAT--TCATGTCATTGGTGACGCGCA 15603 >seq1773 Length=8977 Score = 84.2 bits (92), Expect = 4e-11 Identities = 129/179 (72%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 35608 TCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGT 35667 ||| |||||||| || |||| ||||||| ||||||||||| ||||| || | ||| | Sbjct 8571 TCAGTTTTATGTTGCCGATGGCAAATTGTCATGCCAGTTGTACCAGCGCAGTGCTGATAT 8630 Query 35668 CGGGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCAT-CTGATGGC-C 35725 |||||||||| ||||||||||| |||||| | | |||| ||| || |||| | Sbjct 8631 TTTCCTGGGCGTGCCTTTCAATATTGCTTCATACGCCTTGTTGAC-CATGATGGTGGCAC 8689 Query 35726 AGTATGGTGGGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACACATTTA 35784 || | | || | | ||| ||||| ||| | | ||| || || || || || ||||| Sbjct 8690 AGGTTTGCGGAT-TGCAACTCGGAGATTTTGTGCACACGCTGGGCGATGCGCATATTTA 8747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989466300425265