Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq179 152 6e-32
seq69 143 3e-29
seq5172 138 1e-27
seq8027 93.3 5e-14
>seq179
Length=46302
Score = 152 bits (168), Expect = 6e-32
Identities = 770/1220 (63%), Gaps = 8/1220 (1%)
Strand=Plus/Plus
Query 62683 CGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATG 62742
|||| || || || || ||||| |||||||| || || | |||| | ||| ||||| |
Sbjct 21178 CGTAGTAGATCGTCTCGAAGATGTTCTTATTCAGCTCCCGCGCTTGCTCGCTTTCAAACG 21237
Query 62743 GATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62802
|| || | |||||||||||| ||||| | || || |||||||| |||| || | |
Sbjct 21238 CGTAGTTCATGAGAATAAACGCATCCGCGAGACCCTGGACACCAATGCCGACTGGACGGT 21297
Query 62803 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 62862
| | | | || || | |||||||| || || || ||||| | || || | || |
Sbjct 21298 GGCGCATGTTGGACGTGCGAGCTTCTGCAACGGGGTAGTAATTCACCTCAATCACCTTGT 21357
Query 62863 TGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT 62922
| || || | | || || ||| || | ||| || ||| ||| || |
Sbjct 21358 TCAGGTTACGCGTCACGACGCTGGTCACGTCGTACAGCTTCTTGTAATTAAACACGCCGT 21417
Query 62923 CTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCAT 62982
|| |||||| || || || || || |||| ||||||||| || || |||| |
Sbjct 21418 CTTCAACAAACTTGGGCAGCGCTACCGACGCCAAATTACACACCGCCACTTCATCCGGCG 21477
Query 62983 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTT 63042
|| | | || | ||| ||| | ||||| || ||| || || | || || |
Sbjct 21478 ACGTGAACTCCATCACTTCACAGCACAAGTTACTGGACCGGATCGTGCCAAGGTTCTGCT 21537
Query 63043 GATTACTCTTTTTGTTACAC-GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 63101
| || | ||| | | ||| ||||||||||| || || || || || |||||||||
Sbjct 21538 GGTT-CGATTTGCGGTTCACTGCATCCTTATAGAGCATAAAGGGCACTCCCGTTTCAATC 21596
Query 63102 TGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCCT 63160
|| | || | ||||| ||| | | || | || || || | || | | | |
Sbjct 21597 TGCGCATCCAAGATCGCAAACCACAGCTGCTGG-GCATTGATCGTC--TTCCTCGCCCGT 21653
Query 63161 TTCTCTT--TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT 63218
||||| ||||| |||||| || |||||||| ||||| | || ||
Sbjct 21654 CCCTCTTGTTCGTACTTTTCATACAAAGTCTCAAACTCGTCGCCCCAGTACTCGTACAGC 21713
Query 63219 CTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63278
| ||| ||||| ||||| | ||| ||||| || | | | ||| ||||||||
Sbjct 21714 CCTGGAGCTTCATTTGGACAGAACAAACTCCACTTACCATTTGCTTCCACCCGTTTCATG 21773
Query 63279 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCT 63338
|| ||||| || | ||| | || | || | || | | | ||| || || ||
Sbjct 21774 AATAGATCGGGTACCCACAACGCAAAGAACAAGTCCCGCGCCCGATGGAGTTCATTGCCA 21833
Query 63339 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63398
||| || | |||||| ||| | | | || | ||||||||||||||||| ||
Sbjct 21834 TGATTTTTCCGCAAATCGAGAAACTCAAACACGTCTGCGTGCCACGGTTCCAAGTAGATC 21893
Query 63399 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63458
|| | ||| |||||| || || ||||| | ||||| || |||| |||| |
Sbjct 21894 GCAAACGATCCTTTGCGTTTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCATTAAAC 21953
Query 63459 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCA 63518
|| | | ||| || ||||| ||||| || ||||| || || ||| ||||
Sbjct 21954 ACGCGAAGCATGGGGATAATCCCGTTCGAAGAGCCATTAGTGCCTCGGATGTAGCTATTC 22013
Query 63519 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63578
|||| || ||||| || | || || || |||||| ||| || || | ||
Sbjct 22014 GTGGCCCGGATATTGTGCATACTAATGCCAATCCCTCCTGCCCATTTCGAAATGCACGCA 22073
Query 63579 CATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63638
||| |||| || || |||||||| ||||| ||| |||||| |||| | || |||
Sbjct 22074 CATTGTTTCAAGGTATCATAGATTCCTTCAATGGAATCATCTTTCATAGCCAATAAAAAG 22133
Query 63639 CAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63698
|| ||||| |||| | |||| || || |||||||| | || || | || || |||
Sbjct 22134 CACGAAGACAATTGGGGGCGAGGGGTACCGGCATTAAACAGCGTCGGGGTCGCATGGGTA 22193
Query 63699 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGA 63758
|| | || | || | || | || || || | || | | || ||| || |||
Sbjct 22194 AAAAACTTCTGCGACATTAATTCATATGTTTCCAACGCAGCGATAATGTCCTGTTTATGG 22253
Query 63759 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATT 63818
|| || | ||||| || | | ||| || || || | ||| || | ||| ||| |
Sbjct 22254 ATGCCAATCGCGACTCGTAAAATCATCTGTTGCGGCCGTTCGACGACTTTACCGTTGACC 22313
Query 63819 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 63878
||||| || | ||| | |||||||| |||||||||| ||| || || ||
Sbjct 22314 CGAAACAAATAACCTCGTTCGAGGGTTTTAAACCCAAAATAGTCATATTCGAAATCCCGG 22373
Query 63879 TCGTAAATAATAACCGAATT 63898
|||| || || | |||||
Sbjct 22374 TCGTGGATGATCGCGGAATT 22393
>seq69
Length=63067
Score = 143 bits (158), Expect = 3e-29
Identities = 379/574 (66%), Gaps = 11/574 (2%)
Strand=Plus/Minus
Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655
||||| ||||| |||| |||||| | ||||| || || |||| || ||||| || ||
Sbjct 13093 GTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACC 13034
Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715
||||| || |||||||| || || ||| || || || ||||| || ||||| || |
Sbjct 13033 GCGCTTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTTCGACCGA 12974
Query 33716 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG-TCATGTATC----CACTTTTGA 33770
||||| || | || | ||| | || || | | | || || ||||| |
Sbjct 12973 GGCAAATGCCAGCAGCCGCTCCGCGTA--CGAAGATACTTGTGGGTCGCACCACTTGAGC 12916
Query 33771 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33830
||||||| ||| |||||| ||||| || || || || || || | || | |
Sbjct 12915 GCCCAATTGGCTTTCTTTCGAACACACGGGATGGTCTCAATCGCGCGCAGAAGGTGATCC 12856
Query 33831 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33890
|| || | ||||||| || || || || | || ||| | |||||| || |||
Sbjct 12855 TTCTCCGTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAATAGACTTCCGAGTGGATG 12796
Query 33891 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTA 33950
|||||||| || ||||| || || || || || | ||| || | | |||||||| |
Sbjct 12795 TTTTCAATCGCGATCTGGAAGCCATAAAAGCACCGAGCTTCCGGCACTTGCACTTCATTG 12736
Query 33951 CAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCA 34008
| ||| |||| || | ||| || ||||| || ||||||||||||||||| || || |
Sbjct 12735 CTAAA--GTTCATGGCCAGATTCTCGTTCACAATGCCATCACTGGCTGCAAAGAAGGCGA 12678
Query 34009 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTT 34068
||||| || ||||| | || | || || || ||| || |||| ||| |
Sbjct 12677 GCACATGCTTGATAAAGTGACGCTCATTGTCCGTGAGGTTCGCCCAGTCCTTGAGATCGT 12618
Query 34069 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 34128
| || | || || | ||||| || || || || ||||| || ||||| | ||
Sbjct 12617 GCACCAAGTCTAGCTCCTCAGCAGTCCAGAACGAAGCTTCCGCCTTCTTGTACATCTGCC 12558
Query 34129 AGATGTCATGATATTGGATTGGGAAAATAACAAA 34162
| | ||| || | |||||| || || | |||||
Sbjct 12557 ACACGTCGTGCTCTTGGATCGGAAAGAGCACAAA 12524
>seq5172
Length=1594
Score = 138 bits (152), Expect = 1e-27
Identities = 424/647 (66%), Gaps = 13/647 (2%)
Strand=Plus/Plus
Query 33281 AACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAA 33340
||| ||| |||||| || ||| ||||||||||| || ||||| ||||| |||| ||
Sbjct 952 AACACCCGCTTTTTGATACTCAGAGACACGTTTTTCAAAGAAATTGGTTTTGCCTTGTAA 1011
Query 33341 TGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAA 33400
||| || |||||| || ||||| ||||| | | | || ||||| ||||
Sbjct 1012 TGAAATCAGTTCCATAAAGTCAAAGGGATTTTGAGCGTGATACATTTTGGGCTCACCCAG 1071
Query 33401 T-TCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCA 33459
| |||| | || | || || || || || || || |||||||| ||| ||||
Sbjct 1072 TGTCAGTAG-CAGGCGGTCAGCAACAAACTCGATGTACTGTTTCATCAGGTCAGCGTTCA 1130
Query 33460 TTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCAT 33519
| || || || || || | || | || | |||||| |||||||| | ||||| |
Sbjct 1131 TACCGATCAGGCGTACAGGCAAGGCATCGGTGACAAATTCCTGTTCAATTGCAACCGCGT 1190
Query 33520 TTGTTATAATAAATCTAACGGTTTC-TTCACTCGGTGG---ATGTAATAAATGTTTAAAC 33575
| ||||| || ||| | |||| ||| | || ||| | || | ||
Sbjct 1191 CGGCAATAAT----CTCACGCAGGCGTTCAGCCGGGAGCTTATTTAAAAGCTGCTGGTAC 1246
Query 33576 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAAC 33635
| ||| || ||||| || |||| || || || | | || | ||| || |||||
Sbjct 1247 AGCAAGCAGGCGAAGTCAGTATGCATGCCTTCATCGCGAGAGATCAGTTCATTTGAAAAA 1306
Query 33636 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAA 33695
| | || ||||| |||||||||||||||||||| || ||||| ||| || |||
Sbjct 1307 CTCAAGCCCGGCATCAGGCCACGCTTTTTAAGCCAGAAAATGGAGCAGAAGCTACCAGAA 1366
Query 33696 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA 33755
||||| || ||||| | || |||||||| | ||| | ||| || || | || || |
Sbjct 1367 AAGAAAATGCCTTCAATGGCGGCAAAGGCGACAAGGCGCTCAGCA-AAGCTGC-CT-TTT 1423
Query 33756 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33815
| ||||| ||||||| || || || | || ||||||| ||||| || ||
Sbjct 1424 TCGATCCAGCGCAGAGCCCACTCAGCTTTGCGGGTGACGCAAGGCAGGGTTTCAATCGCG 1483
Query 33816 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33875
|| || ||||||||| | | || || ||||||||| | || ||| ||
Sbjct 1484 CGGAACAGGCGATTTTTTTCACTTGTGTCGCGAATATAAGTATCCAGCAGTAGAGCGTAG 1543
Query 33876 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 33922
|||| ||||| ||||| || || |||||||| ||||| |||||
Sbjct 1544 GTTTCAGAATGGATGTTCTCCATCATGATCTGAAAACCGTAAAAACA 1590
Score = 89.7 bits (98), Expect = 6e-13
Identities = 163/236 (69%), Gaps = 6/236 (3%)
Strand=Plus/Plus
Query 63576 GCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGA 63635
||||| ||| | |||||| |||||||| || ||||| || || ||||| | ||
Sbjct 22 GCGCAGGTTTTGAGCGTGTCGTAGATGCCGTCGATGCTGTCGTCTTTCATGCCGACTAAG 81
Query 63636 AAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 63695
|| ||| |||||| ||| | | ||| |||||||||||||| || | |||||
Sbjct 82 AAGCAGGAAGACATCTGGGGTTTGGGGGTTGATGCATTAAATAAGGTCGGGGTGGCGTGA 141
Query 63696 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTG--AGTCTA-TATCCCAT 63752
|||||||| ||||| || || | ||| || || || | | | || |||| |
Sbjct 142 GTAAACCAGCGCTCAGAGAGCAGTTCGTAGGTTTCGATCACCGCAGGAATATTATCGC-- 199
Query 63753 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTT 63808
|||| || || || || |||||||| | ||| ||||| || | |||||||||||
Sbjct 200 -GATGGATGCCGACCGCTACACGCATCAGCATATGCTGGGGGCGCTCAACAATTTT 254
>seq8027
Length=1067
Score = 93.3 bits (102), Expect = 5e-14
Identities = 288/445 (65%), Gaps = 3/445 (1%)
Strand=Plus/Minus
Query 62066 TGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAA 62125
||| | ||| || || || |||||||| || ||||| || || |||| || |||||
Sbjct 472 TGCAGATTTTGTCCGCAGGTAGTACATGCCGGTTTTGAGGCCTTTTTTCCAGCCATAAAA 413
Query 62126 ATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACT 62185
|||||| || || ||||| || || || | | ||| | ||| | || |||
Sbjct 412 ATGCATGGAGGTCAGCTTGGAGTAGCTGGGGCTTTCCATAAACAGATTTAAGGACTGAGA 353
Query 62186 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTC 62245
||| ||| ||||| || | ||| || ||||| | || | | || |||||
Sbjct 352 CTGACAGATAAAGGCGCCACGGTCAGCTGCCATATCGATCAGGGCACGCTGCTTGATTTC 293
Query 62246 CCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTC---TGAATGGA 62302
||| | ||||| || | | ||| || | ||| |||| | | | || ||||| ||
Sbjct 292 CCAGACGGTTTTGTAGATTTCCTTGATGTTTTCAGGAATCTCAGGAATCGCCTGAATTGA 233
Query 62303 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62362
|||| | | ||||| |||| |||| | |||||||||| | ||| |||
Sbjct 232 TCCATTGGCAGCAATAATTTTATTTTTGAGCACATCATTCCACAGACCCAGCTCAACTAA 173
Query 62363 AACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTA 62422
| | || ||||| |||||| || || || || ||||| || | || || ||
Sbjct 172 GTCGCGCAGCAGATGTTTGTTAACAACAATAAACTCACCGGACAAGACGCGGCGGGTATA 113
Query 62423 AATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62482
| ||| ||||| || || | |||| ||||| || | ||| |||| ||||| ||
Sbjct 112 GAGGTTAGATGTATAGGGCTCAAAACACTCGTTATTGCCGAGAATCTGAGAGGTTGAAGC 53
Query 62483 AGTCGGCATAGGTGCCACCAATAAA 62507
||||||||| || || || ||||||
Sbjct 52 AGTCGGCATGGGCGCAACTAATAAA 28
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629744517540240
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