Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq179 152 6e-32 seq69 143 3e-29 seq5172 138 1e-27 seq8027 93.3 5e-14 >seq179 Length=46302 Score = 152 bits (168), Expect = 6e-32 Identities = 770/1220 (63%), Gaps = 8/1220 (1%) Strand=Plus/Plus Query 62683 CGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATG 62742 |||| || || || || ||||| |||||||| || || | |||| | ||| ||||| | Sbjct 21178 CGTAGTAGATCGTCTCGAAGATGTTCTTATTCAGCTCCCGCGCTTGCTCGCTTTCAAACG 21237 Query 62743 GATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62802 || || | |||||||||||| ||||| | || || |||||||| |||| || | | Sbjct 21238 CGTAGTTCATGAGAATAAACGCATCCGCGAGACCCTGGACACCAATGCCGACTGGACGGT 21297 Query 62803 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 62862 | | | | || || | |||||||| || || || ||||| | || || | || | Sbjct 21298 GGCGCATGTTGGACGTGCGAGCTTCTGCAACGGGGTAGTAATTCACCTCAATCACCTTGT 21357 Query 62863 TGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT 62922 | || || | | || || ||| || | ||| || ||| ||| || | Sbjct 21358 TCAGGTTACGCGTCACGACGCTGGTCACGTCGTACAGCTTCTTGTAATTAAACACGCCGT 21417 Query 62923 CTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCAT 62982 || |||||| || || || || || |||| ||||||||| || || |||| | Sbjct 21418 CTTCAACAAACTTGGGCAGCGCTACCGACGCCAAATTACACACCGCCACTTCATCCGGCG 21477 Query 62983 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTT 63042 || | | || | ||| ||| | ||||| || ||| || || | || || | Sbjct 21478 ACGTGAACTCCATCACTTCACAGCACAAGTTACTGGACCGGATCGTGCCAAGGTTCTGCT 21537 Query 63043 GATTACTCTTTTTGTTACAC-GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 63101 | || | ||| | | ||| ||||||||||| || || || || || ||||||||| Sbjct 21538 GGTT-CGATTTGCGGTTCACTGCATCCTTATAGAGCATAAAGGGCACTCCCGTTTCAATC 21596 Query 63102 TGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCCT 63160 || | || | ||||| ||| | | || | || || || | || | | | | Sbjct 21597 TGCGCATCCAAGATCGCAAACCACAGCTGCTGG-GCATTGATCGTC--TTCCTCGCCCGT 21653 Query 63161 TTCTCTT--TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT 63218 ||||| ||||| |||||| || |||||||| ||||| | || || Sbjct 21654 CCCTCTTGTTCGTACTTTTCATACAAAGTCTCAAACTCGTCGCCCCAGTACTCGTACAGC 21713 Query 63219 CTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63278 | ||| ||||| ||||| | ||| ||||| || | | | ||| |||||||| Sbjct 21714 CCTGGAGCTTCATTTGGACAGAACAAACTCCACTTACCATTTGCTTCCACCCGTTTCATG 21773 Query 63279 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCT 63338 || ||||| || | ||| | || | || | || | | | ||| || || || Sbjct 21774 AATAGATCGGGTACCCACAACGCAAAGAACAAGTCCCGCGCCCGATGGAGTTCATTGCCA 21833 Query 63339 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63398 ||| || | |||||| ||| | | | || | ||||||||||||||||| || Sbjct 21834 TGATTTTTCCGCAAATCGAGAAACTCAAACACGTCTGCGTGCCACGGTTCCAAGTAGATC 21893 Query 63399 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63458 || | ||| |||||| || || ||||| | ||||| || |||| |||| | Sbjct 21894 GCAAACGATCCTTTGCGTTTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCATTAAAC 21953 Query 63459 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCA 63518 || | | ||| || ||||| ||||| || ||||| || || ||| |||| Sbjct 21954 ACGCGAAGCATGGGGATAATCCCGTTCGAAGAGCCATTAGTGCCTCGGATGTAGCTATTC 22013 Query 63519 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63578 |||| || ||||| || | || || || |||||| ||| || || | || Sbjct 22014 GTGGCCCGGATATTGTGCATACTAATGCCAATCCCTCCTGCCCATTTCGAAATGCACGCA 22073 Query 63579 CATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63638 ||| |||| || || |||||||| ||||| ||| |||||| |||| | || ||| Sbjct 22074 CATTGTTTCAAGGTATCATAGATTCCTTCAATGGAATCATCTTTCATAGCCAATAAAAAG 22133 Query 63639 CAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63698 || ||||| |||| | |||| || || |||||||| | || || | || || ||| Sbjct 22134 CACGAAGACAATTGGGGGCGAGGGGTACCGGCATTAAACAGCGTCGGGGTCGCATGGGTA 22193 Query 63699 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGA 63758 || | || | || | || | || || || | || | | || ||| || ||| Sbjct 22194 AAAAACTTCTGCGACATTAATTCATATGTTTCCAACGCAGCGATAATGTCCTGTTTATGG 22253 Query 63759 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATT 63818 || || | ||||| || | | ||| || || || | ||| || | ||| ||| | Sbjct 22254 ATGCCAATCGCGACTCGTAAAATCATCTGTTGCGGCCGTTCGACGACTTTACCGTTGACC 22313 Query 63819 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 63878 ||||| || | ||| | |||||||| |||||||||| ||| || || || Sbjct 22314 CGAAACAAATAACCTCGTTCGAGGGTTTTAAACCCAAAATAGTCATATTCGAAATCCCGG 22373 Query 63879 TCGTAAATAATAACCGAATT 63898 |||| || || | ||||| Sbjct 22374 TCGTGGATGATCGCGGAATT 22393 >seq69 Length=63067 Score = 143 bits (158), Expect = 3e-29 Identities = 379/574 (66%), Gaps = 11/574 (2%) Strand=Plus/Minus Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655 ||||| ||||| |||| |||||| | ||||| || || |||| || ||||| || || Sbjct 13093 GTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACC 13034 Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715 ||||| || |||||||| || || ||| || || || ||||| || ||||| || | Sbjct 13033 GCGCTTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTTCGACCGA 12974 Query 33716 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG-TCATGTATC----CACTTTTGA 33770 ||||| || | || | ||| | || || | | | || || ||||| | Sbjct 12973 GGCAAATGCCAGCAGCCGCTCCGCGTA--CGAAGATACTTGTGGGTCGCACCACTTGAGC 12916 Query 33771 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33830 ||||||| ||| |||||| ||||| || || || || || || | || | | Sbjct 12915 GCCCAATTGGCTTTCTTTCGAACACACGGGATGGTCTCAATCGCGCGCAGAAGGTGATCC 12856 Query 33831 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33890 || || | ||||||| || || || || | || ||| | |||||| || ||| Sbjct 12855 TTCTCCGTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAATAGACTTCCGAGTGGATG 12796 Query 33891 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTA 33950 |||||||| || ||||| || || || || || | ||| || | | |||||||| | Sbjct 12795 TTTTCAATCGCGATCTGGAAGCCATAAAAGCACCGAGCTTCCGGCACTTGCACTTCATTG 12736 Query 33951 CAAAATCGTTCT--GCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCA 34008 | ||| |||| || | ||| || ||||| || ||||||||||||||||| || || | Sbjct 12735 CTAAA--GTTCATGGCCAGATTCTCGTTCACAATGCCATCACTGGCTGCAAAGAAGGCGA 12678 Query 34009 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTT 34068 ||||| || ||||| | || | || || || ||| || |||| ||| | Sbjct 12677 GCACATGCTTGATAAAGTGACGCTCATTGTCCGTGAGGTTCGCCCAGTCCTTGAGATCGT 12618 Query 34069 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 34128 | || | || || | ||||| || || || || ||||| || ||||| | || Sbjct 12617 GCACCAAGTCTAGCTCCTCAGCAGTCCAGAACGAAGCTTCCGCCTTCTTGTACATCTGCC 12558 Query 34129 AGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 | | ||| || | |||||| || || | ||||| Sbjct 12557 ACACGTCGTGCTCTTGGATCGGAAAGAGCACAAA 12524 >seq5172 Length=1594 Score = 138 bits (152), Expect = 1e-27 Identities = 424/647 (66%), Gaps = 13/647 (2%) Strand=Plus/Plus Query 33281 AACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAA 33340 ||| ||| |||||| || ||| ||||||||||| || ||||| ||||| |||| || Sbjct 952 AACACCCGCTTTTTGATACTCAGAGACACGTTTTTCAAAGAAATTGGTTTTGCCTTGTAA 1011 Query 33341 TGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAA 33400 ||| || |||||| || ||||| ||||| | | | || ||||| |||| Sbjct 1012 TGAAATCAGTTCCATAAAGTCAAAGGGATTTTGAGCGTGATACATTTTGGGCTCACCCAG 1071 Query 33401 T-TCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCA 33459 | |||| | || | || || || || || || || |||||||| ||| |||| Sbjct 1072 TGTCAGTAG-CAGGCGGTCAGCAACAAACTCGATGTACTGTTTCATCAGGTCAGCGTTCA 1130 Query 33460 TTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCAT 33519 | || || || || || | || | || | |||||| |||||||| | ||||| | Sbjct 1131 TACCGATCAGGCGTACAGGCAAGGCATCGGTGACAAATTCCTGTTCAATTGCAACCGCGT 1190 Query 33520 TTGTTATAATAAATCTAACGGTTTC-TTCACTCGGTGG---ATGTAATAAATGTTTAAAC 33575 | ||||| || ||| | |||| ||| | || ||| | || | || Sbjct 1191 CGGCAATAAT----CTCACGCAGGCGTTCAGCCGGGAGCTTATTTAAAAGCTGCTGGTAC 1246 Query 33576 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAAC 33635 | ||| || ||||| || |||| || || || | | || | ||| || ||||| Sbjct 1247 AGCAAGCAGGCGAAGTCAGTATGCATGCCTTCATCGCGAGAGATCAGTTCATTTGAAAAA 1306 Query 33636 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAA 33695 | | || ||||| |||||||||||||||||||| || ||||| ||| || ||| Sbjct 1307 CTCAAGCCCGGCATCAGGCCACGCTTTTTAAGCCAGAAAATGGAGCAGAAGCTACCAGAA 1366 Query 33696 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA 33755 ||||| || ||||| | || |||||||| | ||| | ||| || || | || || | Sbjct 1367 AAGAAAATGCCTTCAATGGCGGCAAAGGCGACAAGGCGCTCAGCA-AAGCTGC-CT-TTT 1423 Query 33756 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33815 | ||||| ||||||| || || || | || ||||||| ||||| || || Sbjct 1424 TCGATCCAGCGCAGAGCCCACTCAGCTTTGCGGGTGACGCAAGGCAGGGTTTCAATCGCG 1483 Query 33816 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33875 || || ||||||||| | | || || ||||||||| | || ||| || Sbjct 1484 CGGAACAGGCGATTTTTTTCACTTGTGTCGCGAATATAAGTATCCAGCAGTAGAGCGTAG 1543 Query 33876 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 33922 |||| ||||| ||||| || || |||||||| ||||| ||||| Sbjct 1544 GTTTCAGAATGGATGTTCTCCATCATGATCTGAAAACCGTAAAAACA 1590 Score = 89.7 bits (98), Expect = 6e-13 Identities = 163/236 (69%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 63576 GCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGA 63635 ||||| ||| | |||||| |||||||| || ||||| || || ||||| | || Sbjct 22 GCGCAGGTTTTGAGCGTGTCGTAGATGCCGTCGATGCTGTCGTCTTTCATGCCGACTAAG 81 Query 63636 AAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 63695 || ||| |||||| ||| | | ||| |||||||||||||| || | ||||| Sbjct 82 AAGCAGGAAGACATCTGGGGTTTGGGGGTTGATGCATTAAATAAGGTCGGGGTGGCGTGA 141 Query 63696 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTG--AGTCTA-TATCCCAT 63752 |||||||| ||||| || || | ||| || || || | | | || |||| | Sbjct 142 GTAAACCAGCGCTCAGAGAGCAGTTCGTAGGTTTCGATCACCGCAGGAATATTATCGC-- 199 Query 63753 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTT 63808 |||| || || || || |||||||| | ||| ||||| || | ||||||||||| Sbjct 200 -GATGGATGCCGACCGCTACACGCATCAGCATATGCTGGGGGCGCTCAACAATTTT 254 >seq8027 Length=1067 Score = 93.3 bits (102), Expect = 5e-14 Identities = 288/445 (65%), Gaps = 3/445 (1%) Strand=Plus/Minus Query 62066 TGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAA 62125 ||| | ||| || || || |||||||| || ||||| || || |||| || ||||| Sbjct 472 TGCAGATTTTGTCCGCAGGTAGTACATGCCGGTTTTGAGGCCTTTTTTCCAGCCATAAAA 413 Query 62126 ATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACT 62185 |||||| || || ||||| || || || | | ||| | ||| | || ||| Sbjct 412 ATGCATGGAGGTCAGCTTGGAGTAGCTGGGGCTTTCCATAAACAGATTTAAGGACTGAGA 353 Query 62186 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTC 62245 ||| ||| ||||| || | ||| || ||||| | || | | || ||||| Sbjct 352 CTGACAGATAAAGGCGCCACGGTCAGCTGCCATATCGATCAGGGCACGCTGCTTGATTTC 293 Query 62246 CCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTC---TGAATGGA 62302 ||| | ||||| || | | ||| || | ||| |||| | | | || ||||| || Sbjct 292 CCAGACGGTTTTGTAGATTTCCTTGATGTTTTCAGGAATCTCAGGAATCGCCTGAATTGA 233 Query 62303 TCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62362 |||| | | ||||| |||| |||| | |||||||||| | ||| ||| Sbjct 232 TCCATTGGCAGCAATAATTTTATTTTTGAGCACATCATTCCACAGACCCAGCTCAACTAA 173 Query 62363 AACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTA 62422 | | || ||||| |||||| || || || || ||||| || | || || || Sbjct 172 GTCGCGCAGCAGATGTTTGTTAACAACAATAAACTCACCGGACAAGACGCGGCGGGTATA 113 Query 62423 AATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62482 | ||| ||||| || || | |||| ||||| || | ||| |||| ||||| || Sbjct 112 GAGGTTAGATGTATAGGGCTCAAAACACTCGTTATTGCCGAGAATCTGAGAGGTTGAAGC 53 Query 62483 AGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||| || || || |||||| Sbjct 52 AGTCGGCATGGGCGCAACTAATAAA 28 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629744517540240