Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_003315.1 Length=31508 Score E Sequences producing significant alignments: (Bits) Value seq6365 84.2 4e-12 seq2376 82.4 2e-11 >seq6365 Length=1283 Score = 84.2 bits (92), Expect = 4e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 360 GTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCGAC 419 |||||| |||||| ||||||||||||||| | |||||| |||| ||||||||||| || Sbjct 1059 GTGGGTTATGAAGGGTTCGAACCTTCGACCCGCTGATTAAGAGTCAGCTGCTCTACCAAC 1000 Query 420 TGAGCTAACGACCC 433 |||||||| |||| Sbjct 999 TGAGCTAATCACCC 986 >seq2376 Length=5922 Score = 82.4 bits (90), Expect = 2e-11 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 351 ATATTATTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGC 410 ||||| ||||| || ||| || ||||||| |||| ||||||||||||||||||||| Sbjct 635 ATATT-TTGGTAGGGTGTGCGGGGATCGAACCCACGACAAACGGATTAAAAGTCCGCTGC 693 Query 411 TCTACCGACTGAGCTAACGACCCAATT 437 |||||| |||||||||| |||| ||| Sbjct 694 TCTACCAGCTGAGCTAAC-ACCCCATT 719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 100692898831620