Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_003387.1 Length=52797 Score E Sequences producing significant alignments: (Bits) Value seq6461 86.0 2e-12 >seq6461 Length=1269 Score = 86.0 bits (94), Expect = 2e-12 Identities = 126/173 (73%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 12677 GGCGACAGCGTGATGCAGTTCCTTATGAAGAACGCCGACGCGCTCGGCGTCGAGTACACG 12736 |||||| ||| || | | | | ||| |||||||||| || |||||| ||| || Sbjct 341 GGCGACGCCGTCTTGGACTACGTGATGGCGAACGCCGACTTCTTCCACGTCGACTACGCG 400 Query 12737 ATCTGGCGGCAGACCTACCGCAACACCTCGGGGCA-GTCGAACCTCATGGAGGACCGCGG 12795 |||||||||||||| ||| | || | |||| | ||||| ||||||||||| || Sbjct 401 ATCTGGCGGCAGACGTACTACCCGGCCG-GTGGCACGCCGAACAAGATGGAGGACCGGGG 459 Query 12796 CAGCGACACGCAGAACCACATGGATCACGTGCACGTGA-CGTCGAAGGGCGGC 12847 |||||||| |||||||| | | ||||| ||| | | |||| ||||||||| Sbjct 460 CAGCGACAACGAGAACCACTTCAACCACGTCCACATCACCGTC-AAGGGCGGC 511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 168810189051714