Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq69 172 8e-38 seq5172 168 1e-36 seq179 149 9e-31 >seq69 Length=63067 Score = 172 bits (190), Expect = 8e-38 Identities = 389/577 (67%), Gaps = 17/577 (3%) Strand=Plus/Minus Query 49974 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 50033 ||||| ||||| |||| |||||| || ||||| || || |||| || ||||| || || Sbjct 13093 GTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACC 13034 Query 50034 ACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGATTCCTTCTACTG 50092 ||||| || |||||||| || || ||| || || || || ||||| || ||||| || | Sbjct 13033 GCGCTTCTTCAGCCAAAAGATCGA-GCAGAACGAGCCCGAGAAGAAAATGCCTTCGACCG 12975 Query 50093 CGGCAAAGGCAACAAGTCTCTCTCCATA-------ACTGGCGCTGTCATGTATCCACTTT 50145 |||||| || | || | ||| | || ||| | | ||| | | |||||| Sbjct 12974 AGGCAAATGCCAGCAGCCGCTCCGCGTACGAAGATACTTGTGG-GTC--GCA-CCACTTG 12919 Query 50146 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 50205 | ||||||| ||| |||||| ||||| || || || || || || | || | Sbjct 12918 AGCGCCCAATTGGCTTTCTTTCGAACACACGGGATGGTCTCAATCGCGCGCAGAAGGTGA 12859 Query 50206 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 50265 | || || | ||||||| || || || || | || ||| | |||||| || Sbjct 12858 TCCTTCTCCGTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAATAGACTTCCGAGTGG 12799 Query 50266 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 ||||||||||| || ||||| || || || || || | ||| || | | |||||||| Sbjct 12798 ATGTTTTCAATCGCGATCTGGAAGCCATAAAAGCACCGAGCTTCCGGCACTTGCACTTCA 12739 Query 50326 GTACAAAATCGTTCA--GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 50383 | | ||| ||||| || | ||| || ||||| || || |||||||||||||| || | Sbjct 12738 TTGCTAAA--GTTCATGGCCAGATTCTCGTTCACAATGCCATCACTGGCTGCAAAGAAGG 12681 Query 50384 CCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATAT 50443 | | ||||| || ||||| || || ||| || || || ||| || |||| || Sbjct 12680 CGAGCACATGCTTGATAAAGTGACGCTCATTGTCCGTGAGGTTCGCCCAGTCCTTGAGAT 12621 Query 50444 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 50503 | | | |||| || || | ||||| || || || || ||||| || ||||| | Sbjct 12620 CGTGCACCAAGTCTAGCTCCTCAGCAGTCCAGAACGAAGCTTCCGCCTTCTTGTACATCT 12561 Query 50504 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 ||| | ||| || | |||||| || || | ||||| Sbjct 12560 GCCACACGTCGTGCTCTTGGATCGGAAAGAGCACAAA 12524 >seq5172 Length=1594 Score = 168 bits (186), Expect = 1e-36 Identities = 431/648 (67%), Gaps = 15/648 (2%) Strand=Plus/Plus Query 49659 AACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAA 49718 ||| ||| |||||| || ||| ||||||||||| || ||||| ||||| |||| || Sbjct 952 AACACCCGCTTTTTGATACTCAGAGACACGTTTTTCAAAGAAATTGGTTTTGCCTTGTAA 1011 Query 49719 TGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAA 49778 ||| || |||||| || ||||| ||||| | | | ||| ||||| |||| Sbjct 1012 TGAAATCAGTTCCATAAAGTCAAAGGGATTTTGAGCGTGATACATTTTGGGCTCACCCAG 1071 Query 49779 T-TCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCA 49837 | |||| | || | || || ||||| || || || |||||||| ||| |||| Sbjct 1072 TGTCAGTAG-CAGGCGGTCAGCAACAAACTCGATGTACTGTTTCATCAGGTCAGCGTTCA 1130 Query 49838 TTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCAT 49897 | || || || || || | || | || | |||||| |||||||| | ||||| | Sbjct 1131 TACCGATCAGGCGTACAGGCAAGGCATCGGTGACAAATTCCTGTTCAATTGCAACCGCGT 1190 Query 49898 CTGTTATAATAGATCTAACGGTTTC-TTCACTCGGTGGATGCAATAAA---TGTTTAAAC 49953 | | ||||| || ||| | |||| ||| | | |||| || | || Sbjct 1191 CGGCAATAAT----CTCACGCAGGCGTTCAGCCGGGAGCTTATTTAAAAGCTGCTGGTAC 1246 Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013 | ||| || ||||| || |||| || || || | | || ||||| || ||||| Sbjct 1247 AGCAAGCAGGCGAAGTCAGTATGCATGCCTTCATCGCGAGAGATCAGTTCATTTGAAAAA 1306 Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGA 50072 | | || ||||| |||||||||||||||||||| || ||||| ||| || ||||| Sbjct 1307 CTCAAGCCCGGCATCAGGCCACGCTTTTTAAGCCAGAAAATGGA-GCAGAAGCTACCAGA 1365 Query 50073 AAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTC 50132 |||||| || ||||| | ||||||||||| ||||| | ||| || | ||| | | || Sbjct 1366 AAAGAAAATGCCTTCAATGGCGGCAAAGGCGACAAGGCGCTCAGCAAAGCTGCCTTTTTC 1425 Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 ||||| ||||||| || || || | || ||||||| ||||| || || Sbjct 1426 ---GATCCAGCGCAGAGCCCACTCAGCTTTGCGGGTGACGCAAGGCAGGGTTTCAATCGC 1482 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 || || ||||||||| | | || || ||||||||| | || ||| || Sbjct 1483 GCGGAACAGGCGATTTTTTTCACTTGTGTCGCGAATATAAGTATCCAGCAGTAGAGCGTA 1542 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 50300 |||| ||||| ||||| || || |||||||| ||||| ||||| Sbjct 1543 GGTTTCAGAATGGATGTTCTCCATCATGATCTGAAAACCGTAAAAACA 1590 >seq179 Length=46302 Score = 149 bits (164), Expect = 9e-31 Identities = 761/1205 (63%), Gaps = 10/1205 (1%) Strand=Plus/Plus Query 79355 CGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATG 79414 |||| || || || ||||| || |||||||| || || | |||| ||| ||||| | Sbjct 21178 CGTAGTAGATCGTCTCGAAGATGTTCTTATTCAGCTCCCGCGCTTGCTCGCTTTCAAACG 21237 Query 79415 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 79474 || || | |||||||||||| || || | || || |||||||| |||| || | | Sbjct 21238 CGTAGTTCATGAGAATAAACGCATCCGCGAGACCCTGGACACCAATGCCGACTGGACGGT 21297 Query 79475 GTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 79534 | | | | || || | |||||||| || || || ||||| | || || | || | Sbjct 21298 GGCGCATGTTGGACGTGCGAGCTTCTGCAACGGGGTAGTAATTCACCTCAATCACCTTGT 21357 Query 79535 TGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCAT 79594 | || || | | || || ||| || | || || ||| ||| || | Sbjct 21358 TCAGGTTACGCGTCACGACGCTGGTCACGTCGTACAGCTTCTTGTAATTAAACACGCCGT 21417 Query 79595 CTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 79654 || |||||| || || ||| || || |||| |||||| || || || |||| | Sbjct 21418 CTTCAACAAACTTGGGCAGCGCTACCGACGCCAAATTACACACCGCCACTTCATCCGGCG 21477 Query 79655 CCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTT 79714 || | | || | |||| ||| | |||||| || || || || | || || | Sbjct 21478 ACGTGAACTCCATCACTTCACAGCACAAGTTACTGGACCGGATCGTGCCAAGGTTCTGCT 21537 Query 79715 GATTACTCTTTTTGTTACAC-GCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATC 79773 | || | ||| | | ||| ||||||||||| || || || || || ||||||||| Sbjct 21538 GGTT-CGATTTGCGGTTCACTGCATCCTTATAGAGCATAAAGGGCACTCCCGTTTCAATC 21596 Query 79774 TGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGACTTG-TATCTCT 79831 || | || | ||||| ||| | | || | || || || | ||| | | | Sbjct 21597 TGCGCATCCAAGATCGCAAACCACAGCTGCTGG-GCATTGATCGT---CTTCCTCGCCCG 21652 Query 79832 TTTCTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAA 79889 | ||||| ||||| | | ||| || || |||||||| ||||| |||| | Sbjct 21653 TCCCTCTTGTTCGTACTTTTCATACAAAGTCTCAAACTCGTCGCCCCAGTACTCGTACAG 21712 Query 79890 TCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCAT 79949 || ||| ||| | ||||| | ||| ||||| |||| | | || |||||||| Sbjct 21713 CCCTGGAGCTTCATTTGGACAGAACAAACTCCACTTACCATTTGCTTCCACCCGTTTCAT 21772 Query 79950 AAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCC 80009 || ||||| || | ||| | || | || | || | | | ||| || || || Sbjct 21773 GAATAGATCGGGTACCCACAACGCAAAGAACAAGTCCCGCGCCCGATGGAGTTCATTGCC 21832 Query 80010 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATAT 80069 ||| || | |||||| ||| | | | || | ||||||||||||||||| || Sbjct 21833 ATGATTTTTCCGCAAATCGAGAAACTCAAACACGTCTGCGTGCCACGGTTCCAAGTAGAT 21892 Query 80070 GGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 80129 || | ||| |||||| || || ||||| | ||||| || |||| |||| | Sbjct 21893 CGCAAACGATCCTTTGCGTTTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCATTAAA 21952 Query 80130 AACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCC 80189 || | | ||| || ||||| || || || | ||||| || || ||| ||||| Sbjct 21953 CACGCGAAGCATGGGGATAATCCCGTTCGAAGAGCCATTAGTGCCTCGGATGTAGCTATT 22012 Query 80190 ACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 80249 |||| || ||||| || | || || || |||||| ||| || || | || Sbjct 22013 CGTGGCCCGGATATTGTGCATACTAATGCCAATCCCTCCTGCCCATTTCGAAATGCACGC 22072 Query 80250 GCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAA 80309 ||| |||| || ||||||||||| || || ||| |||||| |||| | || ||| Sbjct 22073 ACATTGTTTCAAGGTATCATAGATTCCTTCAATGGAATCATCTTTCATAGCCAATAAAAA 22132 Query 80310 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 80369 || ||||| |||| | ||| || || |||||||| | || || | || || || Sbjct 22133 GCACGAAGACAATTGGGGGCGAGGGGTACCGGCATTAAACAGCGTCGGGGTCGCATGGGT 22192 Query 80370 AAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATG 80429 ||| | || | |||| || | || || || | || | || ||| || ||| Sbjct 22193 AAAAAACTTCTGCGACATTAATTCATATGTTTCCAACGCAGCGATAATGTCCTGTTTATG 22252 Query 80430 AATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTAT 80489 || || | |||||| || | | ||| || || || | ||| |||| || || | Sbjct 22253 GATGCCAATCGCGACTCGTAAAATCATCTGTTGCGGCCGTTCGACGACTTTACCGTTGAC 22312 Query 80490 TTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 80549 ||||| ||| | ||| | |||||||| |||||||||| ||| || || || Sbjct 22313 CCGAAACAAATAACCTCGTTCGAGGGTTTTAAACCCAAAATAGTCATATTCGAAATCCCG 22372 Query 80550 TTCGT 80554 |||| Sbjct 22373 GTCGT 22377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718185453884120