Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq69 111 2e-19 >seq69 Length=63067 Score = 111 bits (122), Expect = 2e-19 Identities = 286/431 (66%), Gaps = 6/431 (1%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 |||||||| || || | ||||||||||| |||||| || ||||| || || | | Sbjct 13107 CACGCAAAGTCCGTGTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGG 13048 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGAA 13990 || ||||| | || || || || | |||||| || | |||| || || || || ||||| Sbjct 13047 CCAGGCATGAGACCGCGCTTCTTCAGCCAAAAGATCG-AGCAGAACGAGCCCGAGAAGAA 12989 Query 13991 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCT--TTTTTGTTC 14048 || || || || | ||||| || | | || || | |||| | | || | | || Sbjct 12988 AATGCCTTCGACCGAGGCAAATGCCAGCAGCCGCTCCGCGTACGAAGATACTTGTGGGTC 12929 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 | ||| || ||||| | | ||| ||| || | | || || ||||| || Sbjct 12928 GCA--CCACTTGAGCGCCCAATTGGCTTTCTTTCGAACACACGGGATGGTCTCAATCGCG 12871 Query 14109 TTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14168 | | | |||||||| | | | |||||| || ||||| || | ||| Sbjct 12870 CGCAGAAGGTGATCCTTCTCCGTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAATAG 12811 Query 14169 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGAC 14228 | ||| ||||| |||||||| || || ||||| || ||||||||||| | |||||||| | Sbjct 12810 ACTTCCGAGTGGATGTTTTCAATCGCGATCTGGAAGCCATAAAAGCACCGAGCTTCCGGC 12751 Query 14229 CATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCT 14288 ||| ||||| | ||| | ||||| ||| || || || || |||||||| ||| Sbjct 12750 ACTTGCACTTCATTGCTAAAGTTCATGGCCAGATTCTCGTTCACAATGCCATCACTGGCT 12691 Query 14289 GCAAAAAATGC 14299 ||||| || || Sbjct 12690 GCAAAGAAGGC 12680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479672333562200