Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq179 152 7e-32 seq69 140 4e-28 seq5172 136 5e-27 seq8027 104 3e-17 >seq179 Length=46302 Score = 152 bits (168), Expect = 7e-32 Identities = 771/1219 (63%), Gaps = 10/1219 (1%) Strand=Plus/Plus Query 71440 TAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGA 71499 || || || || ||||| || |||||||| || || | |||| | ||| ||||| | Sbjct 21180 TAGTAGATCGTCTCGAAGATGTTCTTATTCAGCTCCCGCGCTTGCTCGCTTTCAAACGCG 21239 Query 71500 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGT 71559 || || | |||||||||||| || || | || || || ||||| |||| || | ||| Sbjct 21240 TAGTTCATGAGAATAAACGCATCCGCGAGACCCTGGACACCAATGCCGACTGGACGGTGG 21299 Query 71560 CTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 71619 | | | || || | |||||||| || || || ||||| | || || | || || Sbjct 21300 CGCATGTTGGACGTGCGAGCTTCTGCAACGGGGTAGTAATTCACCTCAATCACCTTGTTC 21359 Query 71620 AGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCT 71679 || || | | || || ||| || | || || ||| ||| || ||| Sbjct 21360 AGGTTACGCGTCACGACGCTGGTCACGTCGTACAGCTTCTTGTAATTAAACACGCCGTCT 21419 Query 71680 ATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAG-CATC 71738 |||||| | || || || || |||| |||||| || || || |||| | | | Sbjct 21420 TCAACAAACTTGGGCAGCGCTACCGACGCCAAATTACACACCGCCACTTCATCCGGCGAC 21479 Query 71739 GGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTG 71798 | | | | || | |||| ||| | ||||| || ||| || || | || || || Sbjct 21480 GTGA-ACTCCATCACTTCACAGCACAAGTTACTGGACCGGATCGTGCCAAGGTTCTGCTG 21538 Query 71799 ATTACTCTTTTTGTTACAC-GCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCT 71857 || | ||| | | ||| ||||||||||| || ||||| || || |||||||||| Sbjct 21539 GTT-CGATTTGCGGTTCACTGCATCCTTATAGAGCATAAAGGGCACTCCCGTTTCAATCT 21597 Query 71858 GAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATATTCTTGTATCTCTTT 71916 | | || | ||||| ||| | | || | || || || | ||| | | | | Sbjct 21598 GCGCATCCAAGATCGCAAACCACAGCTGCTGG-GCATTGATCGTCTTCCTCG--CCCGTC 21654 Query 71917 TCTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATC 71974 ||||| ||||| | | ||| || || |||||||| ||||| | || | | Sbjct 21655 CCTCTTGTTCGTACTTTTCATACAAAGTCTCAAACTCGTCGCCCCAGTACTCGTACAGCC 21714 Query 71975 CAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAA 72034 | ||| |||||| ||||| | ||| ||||| |||| | | || |||||||| | Sbjct 21715 CTGGAGCTTCATTTGGACAGAACAAACTCCACTTACCATTTGCTTCCACCCGTTTCATGA 21774 Query 72035 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTG 72094 | ||||| || | ||| | || | || | || | | | ||| || || || Sbjct 21775 ATAGATCGGGTACCCACAACGCAAAGAACAAGTCCCGCGCCCGATGGAGTTCATTGCCAT 21834 Query 72095 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 72154 ||| || | |||||| ||| | | | || | ||||||||||||||||| || | Sbjct 21835 GATTTTTCCGCAAATCGAGAAACTCAAACACGTCTGCGTGCCACGGTTCCAAGTAGATCG 21894 Query 72155 CCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 72214 | | ||| |||||| || || ||||| | ||||| || |||| |||| | | Sbjct 21895 CAAACGATCCTTTGCGTTTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCATTAAACA 21954 Query 72215 CTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCAC 72274 | | | ||| || ||||| || || || | ||||| || || ||| ||||| Sbjct 21955 CGCGAAGCATGGGGATAATCCCGTTCGAAGAGCCATTAGTGCCTCGGATGTAGCTATTCG 22014 Query 72275 TGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 72334 |||| || |||||| || | || || || |||||| ||| || || | || | Sbjct 22015 TGGCCCGGATATTGTGCATACTAATGCCAATCCCTCCTGCCCATTTCGAAATGCACGCAC 22074 Query 72335 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 72394 || |||| || ||||||||||| || || || |||||| |||| | || ||| | Sbjct 22075 ATTGTTTCAAGGTATCATAGATTCCTTCAATGGAATCATCTTTCATAGCCAATAAAAAGC 22134 Query 72395 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 72454 | ||||| |||| | ||| || || |||||||| | || || | || || |||| Sbjct 22135 ACGAAGACAATTGGGGGCGAGGGGTACCGGCATTAAACAGCGTCGGGGTCGCATGGGTAA 22194 Query 72455 ACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTA 72514 | | || | |||| || | || || || | || | || ||| || ||| | Sbjct 22195 AAAACTTCTGCGACATTAATTCATATGTTTCCAACGCAGCGATAATGTCCTGTTTATGGA 22254 Query 72515 TTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTT 72574 | || | |||||| || | | ||| || || || | ||| |||| || || | Sbjct 22255 TGCCAATCGCGACTCGTAAAATCATCTGTTGCGGCCGTTCGACGACTTTACCGTTGACCC 22314 Query 72575 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 72634 ||||| || | ||| | |||||||| |||||||||| ||| || || || | Sbjct 22315 GAAACAAATAACCTCGTTCGAGGGTTTTAAACCCAAAATAGTCATATTCGAAATCCCGGT 22374 Query 72635 CGTAAATAATAACCGAATT 72653 ||| || || | ||||| Sbjct 22375 CGTGGATGATCGCGGAATT 22393 >seq69 Length=63067 Score = 140 bits (154), Expect = 4e-28 Identities = 384/579 (66%), Gaps = 21/579 (4%) Strand=Plus/Minus Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138 ||||| |||||||||| |||||| | ||||| || || |||| || ||||| || || Sbjct 13093 GTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACC 13034 Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAAGATTCCTTCTACTG 42197 ||||| || |||||||| || || ||| || || || || ||||| || ||||| || | Sbjct 13033 GCGCTTCTTCAGCCAAAAGATCGA-GCAGAACGAGCCCGAGAAGAAAATGCCTTCGACCG 12975 Query 42198 CCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-ACT-----GTCATGTATCCACTTTT 42251 ||||| || | || | ||| | || | ||| ||| | | |||||| Sbjct 12974 AGGCAAATGCCAGCAGCCGCTCCGCGTACGAAGATACTTGTGGGTC--GCA-CCACTTGA 12918 Query 42252 GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGt 42311 | ||||||| ||| |||||| ||||| || || || || || || | || | | Sbjct 12917 GCGCCCAATTGGCTTTCTTTCGAACACACGGGATGGTCTCAATCGCGCGCAGAAGGTGAT 12858 Query 42312 ttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAA 42371 || || | ||||||| || || || || | || ||| | ||| || || | Sbjct 12857 CCTTCTCCGTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAATAGACTTCCGAGTGGA 12798 Query 42372 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTG 42431 |||||||||| || ||||| || || || || || | || || | || || ||||| Sbjct 12797 TGTTTTCAATCGCGATCTGGAAGCCATAAAAGCACCGAGCTTCCGGCACTTGCACTTCAT 12738 Query 42432 TACAAAATCGTTCA--GCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGC 42489 | | ||| ||||| || | ||| |||||||| || || |||||||||||||| || || Sbjct 12737 TGCTAAA--GTTCATGGCCAGATTCTCGTTCACAATGCCATCACTGGCTGCAAAGAAGGC 12680 Query 42490 CAATACATGTTTTATAAA---ATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGAT 42546 | ||||| || ||||| | | | |||| || | || ||| || |||| Sbjct 12679 GAGCACATGCTTGATAAAGTGACGCTCATTGTCC---GTGAGGTTCGCCCAGTCCTTGAG 12623 Query 42547 ATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACAT 42606 ||| | | |||| || || | ||||| || || ||||| ||||| || ||||| Sbjct 12622 ATCGTGCACCAAGTCTAGCTCCTCAGCAGTCCAGAACGAAGCTTCCGCCTTCTTGTACAT 12563 Query 42607 ATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 | ||| | || || | ||| || || || | ||||| Sbjct 12562 CTGCCACACGTCGTGCTCTTGGATCGGAAAGAGCACAAA 12524 >seq5172 Length=1594 Score = 136 bits (150), Expect = 5e-27 Identities = 426/648 (66%), Gaps = 15/648 (2%) Strand=Plus/Plus Query 41764 AACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAA 41823 ||| ||| |||||| || ||| ||||||||||| || ||||| || || |||| || Sbjct 952 AACACCCGCTTTTTGATACTCAGAGACACGTTTTTCAAAGAAATTGGTTTTGCCTTGTAA 1011 Query 41824 TGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAA 41883 ||| || |||||| || ||||| ||||| | | | ||| ||||| |||| Sbjct 1012 TGAAATCAGTTCCATAAAGTCAAAGGGATTTTGAGCGTGATACATTTTGGGCTCACCCAG 1071 Query 41884 T-TCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCA 41942 | |||| | || | || || | || || || || |||||||| ||| |||| Sbjct 1072 TGTCAGTAG-CAGGCGGTCAGCAACAAACTCGATGTACTGTTTCATCAGGTCAGCGTTCA 1130 Query 41943 TTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGT 42002 | || || || || || | || | || | |||||| |||||||| | ||||||| Sbjct 1131 TACCGATCAGGCGTACAGGCAAGGCATCGGTGACAAATTCCTGTTCAATTGCAACCGCGT 1190 Query 42003 CTGTTATAATAGATCTTACTGTTTC-TTCACTCGGTGGATACAATAAA---TGTTTAAAC 42058 | | ||||| || || | |||| ||| | | |||| || | || Sbjct 1191 CGGCAATAAT----CTCACGCAGGCGTTCAGCCGGGAGCTTATTTAAAAGCTGCTGGTAC 1246 Query 42059 ATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAAC 42118 | ||| || ||||| || |||| || ||||| | | || | ||| || ||||| Sbjct 1247 AGCAAGCAGGCGAAGTCAGTATGCATGCCTTCATCGCGAGAGATCAGTTCATTTGAAAAA 1306 Query 42119 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGA 42177 | | || ||||| |||||||||||||||||||| || || || ||| | | | ||||| Sbjct 1307 CTCAAGCCCGGCATCAGGCCACGCTTTTTAAGCCAGAAAATGGA-GCAGAAGCTACCAGA 1365 Query 42178 AAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC 42237 |||||| || ||||| | || |||||||| | ||| | ||| || || | || || | Sbjct 1366 AAAGAAAATGCCTTCAATGGCGGCAAAGGCGACAAGGCGCTCAGCA-AAGCTGC-CT-TT 1422 Query 42238 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 42297 | ||||| ||||||| || || || | || ||||||| ||||| || || Sbjct 1423 TTCGATCCAGCGCAGAGCCCACTCAGCTTTGCGGGTGACGCAAGGCAGGGTTTCAATCGC 1482 Query 42298 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATA 42357 || || ||||||||| | | || || ||| ||||| | || ||| || Sbjct 1483 GCGGAACAGGCGATTTTTTTCACTTGTGTCGCGAATATAAGTATCCAGCAGTAGAGCGTA 1542 Query 42358 CATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 42405 |||| ||||| ||||| || || |||||||| ||||| ||||| Sbjct 1543 GGTTTCAGAATGGATGTTCTCCATCATGATCTGAAAACCGTAAAAACA 1590 >seq8027 Length=1067 Score = 104 bits (114), Expect = 3e-17 Identities = 289/443 (65%), Gaps = 3/443 (1%) Strand=Plus/Minus Query 70821 TGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAA 70880 ||| | ||| || || || ||||||||||| ||||| || || |||| || ||||| Sbjct 472 TGCAGATTTTGTCCGCAGGTAGTACATGCCGGTTTTGAGGCCTTTTTTCCAGCCATAAAA 413 Query 70881 ATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACT 70940 |||||| || || ||||| ||||| || | || | ||| | |||||| Sbjct 412 ATGCATGGAGGTCAGCTTGGAGTAGCTGGGGCTTTCCATAAACAGATTTAAGGACTGAGA 353 Query 70941 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTC 71000 ||| ||| ||||| || | ||| || ||||| | || | | || ||||| Sbjct 352 CTGACAGATAAAGGCGCCACGGTCAGCTGCCATATCGATCAGGGCACGCTGCTTGATTTC 293 Query 71001 CCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTC---TGAATGGA 71057 ||| | ||||| || | | ||| || | ||| |||| | | | || ||||| || Sbjct 292 CCAGACGGTTTTGTAGATTTCCTTGATGTTTTCAGGAATCTCAGGAATCGCCTGAATTGA 233 Query 71058 TCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAA 71117 |||| | |||||||| ||||||||| | | |||||||| | ||| ||| Sbjct 232 TCCATTGGCAGCAATAATTTTATTTTTGAGCACATCATTCCACAGACCCAGCTCAACTAA 173 Query 71118 AACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTA 71177 | | || ||||| ||||| || ||| || || ||||| || | || || || Sbjct 172 GTCGCGCAGCAGATGTTTGTTAACAACAATAAACTCACCGGACAAGACGCGGCGGGTATA 113 Query 71178 AATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 71237 | ||| ||||| || || | |||| ||||| || | ||| |||| ||||| || Sbjct 112 GAGGTTAGATGTATAGGGCTCAAAACACTCGTTATTGCCGAGAATCTGAGAGGTTGAAGC 53 Query 71238 AGTCGGCATAGGTGCCACCAATA 71260 ||||||||| || || || |||| Sbjct 52 AGTCGGCATGGGCGCAACTAATA 30 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671061322685080