Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq69 190 3e-43 seq179 127 3e-24 seq70 84.2 3e-11 >seq69 Length=63067 Score = 190 bits (210), Expect = 3e-43 Identities = 600/913 (66%), Gaps = 44/913 (5%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 || ||||| ||| | || ||| | ||| | |||||||| ||||| | || || || Sbjct 12530 CTCTTTCCGATCCAAGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAAGCTTCGTTC 12589 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| | || ||| | || || | || || | || |||| || | | || Sbjct 12590 TGGACTGCTGAGGAGCTAGACTTGGTGCACGATCTCAAGGACTGGGCGAACC---TCACG 12646 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || | |||||| | ||||| ||| | | ||||||||||| | | ||||| || Sbjct 12647 GACAATGAGCGTCACTTTATCAAGCATGTGCTCGCCTTCTTTGCAGCCAGTGATGGCATT 12706 Query 125175 GTCAACGACAATCTGTTGACACGAT-TCTCTCAA-GAGTTGACCATTCCAGAGGTGTCGT 125232 || ||||| |||||| | || || | | ||| || || | || || | || Sbjct 12707 GTGAACGAGAATCTG--GCCATGAACTTTAGCAATGAAGTGCAAGTGCCGGAAGCTCGGT 12764 Query 125233 GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 ||||||| || ||||| ||| |||||| ||| | ||||||||| | || || || | Sbjct 12765 GCTTTTATGGCTTCCAGATCGCGATTGAAAACATCCACTCGGAAGTCTATTCGCTGCTCA 12824 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCA--ATCGACAC 125350 |||||| ||||||| || || ||| | | || ||| ||| || || || Sbjct 12825 TTGACACGTACATTAAAGAGGCG--ACGGAGAAGGATCACCTTCTGCGCGCGATTGAGAC 12882 Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT- 125409 | |||| | | || || || || | |||| | | |||| ||| | |||||| Sbjct 12883 CATCCCGTGTGTTCGAAAGAAAGCCAATTGGGCGCTCAAGTGGTGCGAC--CCACAAGTA 12940 Query 125410 -CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG- 125467 |||||||||| || | ||| ||||||| ||| | || || ||||| ||||| ||||| Sbjct 12941 TCTTCGTACGCGGAGCGGCTGCTGGCATTTGCCTCGGTCGAAGGCATTTTCTTCTCGGGC 13000 Query 125468 TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAG 125527 | ||| ||| | ||||||||||| ||||||||||| |||||||| || || | | Sbjct 13001 TCGTTCTGCT-CGATCTTTTGGCTGAAGAAGCGCGGTCTCATGCCTGGCCTCAGCTTCTC 13059 Query 125528 TAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCG 125587 |||||| | || |||||| |||||| | ||| |||||||| || ||| Sbjct 13060 GAACGAGCTCATTAGTCGAGATGAGGGCATGCACACGGACTTTGCGTGCCTCATGTACTC 13119 Query 125588 CAACTATCTGCGTCCCGAGTGCAGATCCAGC--GATGAAAAGGTCATCAACATTGTAACC 125645 ||| | |||| | | | || || || ||| || || | | Sbjct 13120 CAAG-----------CTAGTGAACAAGCTGCCCGAGGACCGCGTCCACACGATCATTCGC 13168 Query 125646 GATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCATGATTGG 125704 || || |||| ||| || || |||||| | || || || || || ||| ||||||| Sbjct 13169 GACGCAGTGACGATCGAGCACGAGTTTGTGCGGGACTCGCTGCCCGTTGAGC-TGATTGG 13227 Query 125705 CATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGA 125764 |||||||| ||| |||||| ||||||| |||||||| || || || || ||||| Sbjct 13228 CATGAACTCGGCGCTCATGTGCCAGTACATTGAGTTTGTAGCGGACCGCCTGTTGTAC-- 13285 Query 125765 GTTGATTGGC----CGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCA 125820 | | | ||| || ||||||| | | || ||||| || ||||| | ||| || | Sbjct 13286 -TCGCTCGGCGTGTCG-AAGATTTTCCATGCAAAGAACCCATTTGACTGGATGGACATGA 13343 Query 125821 TATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA--CAAACGCTA 125878 | || || |||| ||||| ||||||||||||||| || ||||||| | || ||| Sbjct 13344 TCTCGCTTCAGGGCAAGACGAACTTTTTCGAGAAGCGTGTGGGCGAGTACTCCAAGGCT- 13402 Query 125879 CGGTGTCGGTGTC 125891 ||||| |||||| Sbjct 13403 -GGTGTAGGTGTC 13414 >seq179 Length=46302 Score = 127 bits (140), Expect = 3e-24 Identities = 370/566 (65%), Gaps = 4/566 (1%) Strand=Plus/Minus Query 96834 CCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTACACAGGGCGGCAATAAACGG 96893 || ||||| | ||| |||| | | |||||||||| || || ||| ||||| Sbjct 21967 CCCATGCTTCGCGTGTTTAATGACACGGCACGATACGTGGATCAAGGTGGCGGCAAACGC 21908 Query 96894 CCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAG 96953 ||| | | || ||||||||||||| |||||||| ||||| ||||| ||| |||| Sbjct 21907 AAAGGATCGTTTGCGATCTACTTGGAACCGTGGCACGCAGACGTGTTTGAGTTTCTCGAT 21848 Query 96954 ATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGG 97013 |||| ||||| |||| |||| || || |||||||||| | ||| | ||| Sbjct 21847 TTGCGGAAAAATCATGGCAATGAACTCCATCGGGCGCGGGACTTGTTCTTTGCGTTGTGG 21788 Query 97014 GTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCC 97073 || || ||| | |||||||| || || | | ||| | ||||| | | || || Sbjct 21787 GTACCCGATCTATTCATGAAACGGGTGGAAGCAAATGGTAAGTGGAGTTTGTTCTGTCCA 21728 Query 97074 GACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCC 97133 | | || || |||| ||| | ||||||||| ||||||||| | ||| Sbjct 21727 AATGAAGCTCCAGGGCTGTACGAGTACTGGGGCGACGAGTTTGAGACTTTGTATGAAAAG 21668 Query 97134 TACGAGCAAGAGGGCCGATACGTG--AGACGAGTCGATGCACGAGAACTGTGGAAGGCCA 97191 ||||| |||||||| || || | |||||| || |||| | | |||||| || | Sbjct 21667 TACGAACAAGAGGGACG-GGCGAGGAAGACGA-TCAATGCCCAGCAGCTGTGGTTTGCGA 21610 Query 97192 TCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATC 97251 || || || ||| | || || ||| || | || ||||| |||||| | ||||| | Sbjct 21609 TCTTGGATGCGCAGATTGAAACGGGAGTGCCCTTTATGCTCTATAAGGATGCAGTGAACC 21550 Query 97252 GCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTG 97311 |||| ||||| | || | ||||| ||| | | || ||||| ||| | Sbjct 21549 GCAAATCGAACCAGCAGAACCTTGGCACGATCCGGTCCAGTAACTTGTGCTGTGAAGTGA 21490 Query 97312 TAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCA 97371 | |||| | | || ||||| || ||| || || | |||| ||||| ||||||| Sbjct 21489 TGGAGTTCACGTCGCCGGATGAAGTGGCGGTGTGTAATTTGGCGTCGGTAGCGCTGCCCA 21430 Query 97372 AGTTTGTAGAGGGTAAAGTGTTTAAT 97397 ||||||| || | ||||||||| Sbjct 21429 AGTTTGTTGAAGACGGCGTGTTTAAT 21404 Score = 91.5 bits (100), Expect = 2e-13 Identities = 289/437 (66%), Gaps = 12/437 (3%) Strand=Plus/Minus Query 97785 AACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCT 97844 |||||| |||| ||||| || ||||| |||||| | || |||| | | ||||| Sbjct 21004 AACTCTCTGCTCGTGGCGCCAATGCCGACGGCTTCGACGGCCCAGATTCTGGGCAACAAC 20945 Query 97845 GAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTT 97904 || || |||| |||| |||||| || |||||| | | ||| | | |||| |||||| Sbjct 20944 GAGTCGATTGAGCCGTACACGTCGAATATGTACAACCGCCGCGTGCTGGCTGGCGAGTTT 20885 Query 97905 -CAATTGACCAACGTGCACTTGGTTCGAGACTTG---GAACGGCTCAATCTGTG-GAACG 97959 | |||| ||| | || || | || ||| || | | || |||| | || Sbjct 20884 ACGATTGTA-AACAAGTACCTGATGAAGGAATTGATTGACCTGGGCA-TCTGGACGCCCG 20827 Query 97960 ATGACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATCC 98019 | | | ||| | || || || || ||| ||| | ||||| ||| | ||||| Sbjct 20826 AAGTCCGCAACCAAAT--TC-TGAACGACGGTGGCTCCGTGCAAAAGGTTAAGACCATCC 20770 Query 98020 CGGAAGA-GTTGCGCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATC 98078 || | || || | | || |||||||| || ||||| ||| | ||| || | | Sbjct 20769 CGAATGATGTCAAGGAAAAG-TACAAGACAGTGTGGGAAATTAAGCAGAAGTCGATCTTG 20711 Query 98079 GATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTT 98138 ||| | | || || | || | |||||| |||||| || ||| ||||| | | || Sbjct 20710 GATCTCTCGGCTGATCGTGGCGCGTACATTTGCCAGAGCCAGTCGCTCAATATTCATATT 20651 Query 98139 GCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTC 98198 || || || || |||| |||| ||||| ||||||||||| ||||| ||||| ||| Sbjct 20650 GCGGATCCGACGATCAGTAAGCTGACGTCGATGCACTTTTACGCGTGGAAGAAGGGGCTC 20591 Query 98199 AAGACGGGCATGTACTA 98215 |||||||| ||||| || Sbjct 20590 AAGACGGGTATGTATTA 20574 >seq70 Length=62938 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 127444 AATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGT 127503 || |||||||||| |||||| || ||||| ||||| |||||||| | ||||||| Sbjct 34989 AAGCCGTGCGTCAAGTGGCCGCCACTGGGCAAGTCGAGGCCCATGATGCGGTCGTGCGGA 34930 Query 127504 TTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTAC 127559 | || | ||||| |||||||||||||| ||||||||||||||| || || Sbjct 34929 CGCAGGAGCGCCGTGTAGACGGCAAAGTTGGCTGGCGAGCCCGAGTACGGCTGCAC 34874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740973209343080