Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq69 190 3e-43
seq179 127 3e-24
seq70 84.2 3e-11
>seq69
Length=63067
Score = 190 bits (210), Expect = 3e-43
Identities = 600/913 (66%), Gaps = 44/913 (5%)
Strand=Plus/Plus
Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054
|| ||||| ||| | || ||| | ||| | |||||||| ||||| | || || ||
Sbjct 12530 CTCTTTCCGATCCAAGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAAGCTTCGTTC 12589
Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114
||||| | || ||| | || || | || || | || |||| || | | ||
Sbjct 12590 TGGACTGCTGAGGAGCTAGACTTGGTGCACGATCTCAAGGACTGGGCGAACC---TCACG 12646
Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174
|| | |||||| | ||||| ||| | | ||||||||||| | | ||||| ||
Sbjct 12647 GACAATGAGCGTCACTTTATCAAGCATGTGCTCGCCTTCTTTGCAGCCAGTGATGGCATT 12706
Query 125175 GTCAACGACAATCTGTTGACACGAT-TCTCTCAA-GAGTTGACCATTCCAGAGGTGTCGT 125232
|| ||||| |||||| | || || | | ||| || || | || || | ||
Sbjct 12707 GTGAACGAGAATCTG--GCCATGAACTTTAGCAATGAAGTGCAAGTGCCGGAAGCTCGGT 12764
Query 125233 GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292
||||||| || ||||| ||| |||||| ||| | ||||||||| | || || || |
Sbjct 12765 GCTTTTATGGCTTCCAGATCGCGATTGAAAACATCCACTCGGAAGTCTATTCGCTGCTCA 12824
Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCA--ATCGACAC 125350
|||||| ||||||| || || ||| | | || ||| ||| || || ||
Sbjct 12825 TTGACACGTACATTAAAGAGGCG--ACGGAGAAGGATCACCTTCTGCGCGCGATTGAGAC 12882
Query 125351 GGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT- 125409
| |||| | | || || || || | |||| | | |||| ||| | ||||||
Sbjct 12883 CATCCCGTGTGTTCGAAAGAAAGCCAATTGGGCGCTCAAGTGGTGCGAC--CCACAAGTA 12940
Query 125410 -CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG- 125467
|||||||||| || | ||| ||||||| ||| | || || ||||| ||||| |||||
Sbjct 12941 TCTTCGTACGCGGAGCGGCTGCTGGCATTTGCCTCGGTCGAAGGCATTTTCTTCTCGGGC 13000
Query 125468 TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAG 125527
| ||| ||| | ||||||||||| ||||||||||| |||||||| || || | |
Sbjct 13001 TCGTTCTGCT-CGATCTTTTGGCTGAAGAAGCGCGGTCTCATGCCTGGCCTCAGCTTCTC 13059
Query 125528 TAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCG 125587
|||||| | || |||||| |||||| | ||| |||||||| || |||
Sbjct 13060 GAACGAGCTCATTAGTCGAGATGAGGGCATGCACACGGACTTTGCGTGCCTCATGTACTC 13119
Query 125588 CAACTATCTGCGTCCCGAGTGCAGATCCAGC--GATGAAAAGGTCATCAACATTGTAACC 125645
||| | |||| | | | || || || ||| || || | |
Sbjct 13120 CAAG-----------CTAGTGAACAAGCTGCCCGAGGACCGCGTCCACACGATCATTCGC 13168
Query 125646 GATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC-AGCATGATTGG 125704
|| || |||| ||| || || |||||| | || || || || || ||| |||||||
Sbjct 13169 GACGCAGTGACGATCGAGCACGAGTTTGTGCGGGACTCGCTGCCCGTTGAGC-TGATTGG 13227
Query 125705 CATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGA 125764
|||||||| ||| |||||| ||||||| |||||||| || || || || |||||
Sbjct 13228 CATGAACTCGGCGCTCATGTGCCAGTACATTGAGTTTGTAGCGGACCGCCTGTTGTAC-- 13285
Query 125765 GTTGATTGGC----CGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCA 125820
| | | ||| || ||||||| | | || ||||| || ||||| | ||| || |
Sbjct 13286 -TCGCTCGGCGTGTCG-AAGATTTTCCATGCAAAGAACCCATTTGACTGGATGGACATGA 13343
Query 125821 TATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA--CAAACGCTA 125878
| || || |||| ||||| ||||||||||||||| || ||||||| | || |||
Sbjct 13344 TCTCGCTTCAGGGCAAGACGAACTTTTTCGAGAAGCGTGTGGGCGAGTACTCCAAGGCT- 13402
Query 125879 CGGTGTCGGTGTC 125891
||||| ||||||
Sbjct 13403 -GGTGTAGGTGTC 13414
>seq179
Length=46302
Score = 127 bits (140), Expect = 3e-24
Identities = 370/566 (65%), Gaps = 4/566 (1%)
Strand=Plus/Minus
Query 96834 CCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTACACAGGGCGGCAATAAACGG 96893
|| ||||| | ||| |||| | | |||||||||| || || ||| |||||
Sbjct 21967 CCCATGCTTCGCGTGTTTAATGACACGGCACGATACGTGGATCAAGGTGGCGGCAAACGC 21908
Query 96894 CCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAG 96953
||| | | || ||||||||||||| |||||||| ||||| ||||| ||| ||||
Sbjct 21907 AAAGGATCGTTTGCGATCTACTTGGAACCGTGGCACGCAGACGTGTTTGAGTTTCTCGAT 21848
Query 96954 ATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGG 97013
|||| ||||| |||| |||| || || |||||||||| | ||| | |||
Sbjct 21847 TTGCGGAAAAATCATGGCAATGAACTCCATCGGGCGCGGGACTTGTTCTTTGCGTTGTGG 21788
Query 97014 GTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCC 97073
|| || ||| | |||||||| || || | | ||| | ||||| | | || ||
Sbjct 21787 GTACCCGATCTATTCATGAAACGGGTGGAAGCAAATGGTAAGTGGAGTTTGTTCTGTCCA 21728
Query 97074 GACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCC 97133
| | || || |||| ||| | ||||||||| ||||||||| | |||
Sbjct 21727 AATGAAGCTCCAGGGCTGTACGAGTACTGGGGCGACGAGTTTGAGACTTTGTATGAAAAG 21668
Query 97134 TACGAGCAAGAGGGCCGATACGTG--AGACGAGTCGATGCACGAGAACTGTGGAAGGCCA 97191
||||| |||||||| || || | |||||| || |||| | | |||||| || |
Sbjct 21667 TACGAACAAGAGGGACG-GGCGAGGAAGACGA-TCAATGCCCAGCAGCTGTGGTTTGCGA 21610
Query 97192 TCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATC 97251
|| || || ||| | || || ||| || | || ||||| |||||| | ||||| |
Sbjct 21609 TCTTGGATGCGCAGATTGAAACGGGAGTGCCCTTTATGCTCTATAAGGATGCAGTGAACC 21550
Query 97252 GCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTG 97311
|||| ||||| | || | ||||| ||| | | || ||||| ||| |
Sbjct 21549 GCAAATCGAACCAGCAGAACCTTGGCACGATCCGGTCCAGTAACTTGTGCTGTGAAGTGA 21490
Query 97312 TAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCA 97371
| |||| | | || ||||| || ||| || || | |||| ||||| |||||||
Sbjct 21489 TGGAGTTCACGTCGCCGGATGAAGTGGCGGTGTGTAATTTGGCGTCGGTAGCGCTGCCCA 21430
Query 97372 AGTTTGTAGAGGGTAAAGTGTTTAAT 97397
||||||| || | |||||||||
Sbjct 21429 AGTTTGTTGAAGACGGCGTGTTTAAT 21404
Score = 91.5 bits (100), Expect = 2e-13
Identities = 289/437 (66%), Gaps = 12/437 (3%)
Strand=Plus/Minus
Query 97785 AACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCT 97844
|||||| |||| ||||| || ||||| |||||| | || |||| | | |||||
Sbjct 21004 AACTCTCTGCTCGTGGCGCCAATGCCGACGGCTTCGACGGCCCAGATTCTGGGCAACAAC 20945
Query 97845 GAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTT 97904
|| || |||| |||| |||||| || |||||| | | ||| | | |||| ||||||
Sbjct 20944 GAGTCGATTGAGCCGTACACGTCGAATATGTACAACCGCCGCGTGCTGGCTGGCGAGTTT 20885
Query 97905 -CAATTGACCAACGTGCACTTGGTTCGAGACTTG---GAACGGCTCAATCTGTG-GAACG 97959
| |||| ||| | || || | || ||| || | | || |||| | ||
Sbjct 20884 ACGATTGTA-AACAAGTACCTGATGAAGGAATTGATTGACCTGGGCA-TCTGGACGCCCG 20827
Query 97960 ATGACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATCC 98019
| | | ||| | || || || || ||| ||| | ||||| ||| | |||||
Sbjct 20826 AAGTCCGCAACCAAAT--TC-TGAACGACGGTGGCTCCGTGCAAAAGGTTAAGACCATCC 20770
Query 98020 CGGAAGA-GTTGCGCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATC 98078
|| | || || | | || |||||||| || ||||| ||| | ||| || | |
Sbjct 20769 CGAATGATGTCAAGGAAAAG-TACAAGACAGTGTGGGAAATTAAGCAGAAGTCGATCTTG 20711
Query 98079 GATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTT 98138
||| | | || || | || | |||||| |||||| || ||| ||||| | | ||
Sbjct 20710 GATCTCTCGGCTGATCGTGGCGCGTACATTTGCCAGAGCCAGTCGCTCAATATTCATATT 20651
Query 98139 GCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTC 98198
|| || || || |||| |||| ||||| ||||||||||| ||||| ||||| |||
Sbjct 20650 GCGGATCCGACGATCAGTAAGCTGACGTCGATGCACTTTTACGCGTGGAAGAAGGGGCTC 20591
Query 98199 AAGACGGGCATGTACTA 98215
|||||||| ||||| ||
Sbjct 20590 AAGACGGGTATGTATTA 20574
>seq70
Length=62938
Score = 84.2 bits (92), Expect = 3e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 127444 AATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGT 127503
|| |||||||||| |||||| || ||||| ||||| |||||||| | |||||||
Sbjct 34989 AAGCCGTGCGTCAAGTGGCCGCCACTGGGCAAGTCGAGGCCCATGATGCGGTCGTGCGGA 34930
Query 127504 TTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTAC 127559
| || | ||||| |||||||||||||| ||||||||||||||| || ||
Sbjct 34929 CGCAGGAGCGCCGTGTAGACGGCAAAGTTGGCTGGCGAGCCCGAGTACGGCTGCAC 34874
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740973209343080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |