Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_005066.1
Length=164018
Score E
Sequences producing significant alignments: (Bits) Value
seq2003 163 3e-35
>seq2003
Length=7520
Score = 163 bits (180), Expect = 3e-35
Identities = 292/420 (70%), Gaps = 6/420 (1%)
Strand=Plus/Minus
Query 135785 CATCAGGTTATTAATCTGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCC 135844
||||||| || ||||| ||||| ||||| |||||||| | ||||| ||||| || ||
Sbjct 7093 CATCAGGCGGTTGATCTGCACGCCATAATCGAGATGACGCACACGGTTTTCTTCTACGCC 7034
Query 135845 CTTATTGTTCTTTAACACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAG 135904
||||| || | ||| | ||| ||| | || | ||||||| ||||| | |
Sbjct 7033 GCGGTTGTTTTTCAGCACCAGCAGTGATTCGACTTCAAGGTGCCACAACGGGTAGAACAA 6974
Query 135905 AGTCGCCGCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATG 135964
||||||||||| || || | |||||| || ||||| || || || |||| ||| || |
Sbjct 6973 CGTCGCCGCCCCACCCCGCACACCGCCCTGCGAGCAGGATTTCACCGCAGACTGGAACAG 6914
Query 135965 TTTCCAGAATGGGATAACGCCAGTATGACGAACTTCACCATGCC-CG-ATCTTAGATCCT 136022
||| |||| || | || ||||| | |||| || ||| || |||| ||
Sbjct 6913 TTTGTAGAACGGCAGGCAACCGGTATGTTGCGCTTCGCC--GCCACGTATCTCGCTGCCC 6856
Query 136023 TCCGCGCGAATCATACCAGCGTTGATACCGATGCCAGCACGCTTGCTA-ATATACTTGAT 136081
|||||| || || ||||||| || ||||| || || |||| | | |||||| |
Sbjct 6855 AGCGCGCGGATGCGGCCCGCGTTGACGCCTATGCCGGCGCG-TTGCGAGACATACTTCAC 6797
Query 136082 GATTGCATTTGCTGTTTCGTTGATGCCCTGCAATGAGTCATCACTTTCAATCACCACGCA 136141
||| || | | ||| | ||||||| | || |||||||| || |||| |||||
Sbjct 6796 GATCGCGCTGGTGGTTGCATTGATGCTGTCCAGGCTGTCATCACACTCGATCAGTACGCA 6737
Query 136142 CGAACTAAATTGTCGTGTTGGAGTACGCACACCCGCCATAATCGGAGTAGGCAGAGAGAT 136201
|| || || || || || |||||||||||||| ||||| || || |||||||| |||||
Sbjct 6736 GGAGCTGAACTGGCGCGTAGGAGTACGCACACCGGCCATGATAGGCGTAGGCAGCGAGAT 6677
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 524668711689040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |