Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_005066.1 Length=164018 Score E Sequences producing significant alignments: (Bits) Value seq2003 163 3e-35 >seq2003 Length=7520 Score = 163 bits (180), Expect = 3e-35 Identities = 292/420 (70%), Gaps = 6/420 (1%) Strand=Plus/Minus Query 135785 CATCAGGTTATTAATCTGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCC 135844 ||||||| || ||||| ||||| ||||| |||||||| | ||||| ||||| || || Sbjct 7093 CATCAGGCGGTTGATCTGCACGCCATAATCGAGATGACGCACACGGTTTTCTTCTACGCC 7034 Query 135845 CTTATTGTTCTTTAACACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAG 135904 ||||| || | ||| | ||| ||| | || | ||||||| ||||| | | Sbjct 7033 GCGGTTGTTTTTCAGCACCAGCAGTGATTCGACTTCAAGGTGCCACAACGGGTAGAACAA 6974 Query 135905 AGTCGCCGCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATG 135964 ||||||||||| || || | |||||| || ||||| || || || |||| ||| || | Sbjct 6973 CGTCGCCGCCCCACCCCGCACACCGCCCTGCGAGCAGGATTTCACCGCAGACTGGAACAG 6914 Query 135965 TTTCCAGAATGGGATAACGCCAGTATGACGAACTTCACCATGCC-CG-ATCTTAGATCCT 136022 ||| |||| || | || ||||| | |||| || ||| || |||| || Sbjct 6913 TTTGTAGAACGGCAGGCAACCGGTATGTTGCGCTTCGCC--GCCACGTATCTCGCTGCCC 6856 Query 136023 TCCGCGCGAATCATACCAGCGTTGATACCGATGCCAGCACGCTTGCTA-ATATACTTGAT 136081 |||||| || || ||||||| || ||||| || || |||| | | |||||| | Sbjct 6855 AGCGCGCGGATGCGGCCCGCGTTGACGCCTATGCCGGCGCG-TTGCGAGACATACTTCAC 6797 Query 136082 GATTGCATTTGCTGTTTCGTTGATGCCCTGCAATGAGTCATCACTTTCAATCACCACGCA 136141 ||| || | | ||| | ||||||| | || |||||||| || |||| ||||| Sbjct 6796 GATCGCGCTGGTGGTTGCATTGATGCTGTCCAGGCTGTCATCACACTCGATCAGTACGCA 6737 Query 136142 CGAACTAAATTGTCGTGTTGGAGTACGCACACCCGCCATAATCGGAGTAGGCAGAGAGAT 136201 || || || || || || |||||||||||||| ||||| || || |||||||| ||||| Sbjct 6736 GGAGCTGAACTGGCGCGTAGGAGTACGCACACCGGCCATGATAGGCGTAGGCAGCGAGAT 6677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 524668711689040