Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_005083.2 Length=244834 Score E Sequences producing significant alignments: (Bits) Value seq3915 89.7 8e-13 >seq3915 Length=2367 Score = 89.7 bits (98), Expect = 8e-13 Identities = 194/284 (68%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 148893 GTATTCGAACAGCTTACTGAAAAACAACTTTCATTCTTCTGGCGACCAGAAGAAGTCGAT 148952 || ||||| |||| | || |||||||| || ||||||||||| ||||||||||||||| Sbjct 984 GTGTTCGAGAAGCTGATCGAGAAACAACTCTCCTTCTTCTGGCGTCCAGAAGAAGTCGAT 925 Query 148953 TTGACTCTTGACTCTCAAGAATTTGATCGAATGCCCGAACACTGGAAA-CACGTGTTCAC 149011 || | | ||| || | | | | ||||||| || || ||| || | |||| Sbjct 924 GTGTCGCAAGACCGCGCTGACTATCAAGGCCTGCCCGAGCA-TGAAAAGCATATTTTCAT 866 Query 149012 GCAAAATCTGAAGTATCAATCACTGCTAGACTCAGTGCAGGGTCGTGCGCCTAATATCGC 149071 || ||||||||||| | ||||| || || | ||||| ||| ||||| | || Sbjct 865 CAGCAACCTGAAGTATCAGACGCTGCTGGATTCCATCCAGGGCCGTAGCCCTAACGTGGC 806 Query 149072 GTTCTTGCCTAT-CTGT-AGTGACAACTCGCTTGAAAACTGGATCACTACGTGGGACTTC 149129 || ||||| | ||| | || | | ||| |||| ||||||| || |||| || Sbjct 805 CTTGTTGCCGCTGGTGTCATTGCC--CGAGCTGGAAACCTGGATCGAGACCTGGGCGTTT 748 Query 149130 AGTGAAACTATTCACAGTCGCTCTTACACGCACATCATGCGCAA 149173 || || || ||| ||||| ||||| |||||||| ||||| Sbjct 747 TCCGAGACCATACACTCGCGCTCATACACCCACATCATCCGCAA 704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783249903091920