Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_005083.2
Length=244834
Score E
Sequences producing significant alignments: (Bits) Value
seq3915 89.7 8e-13
>seq3915
Length=2367
Score = 89.7 bits (98), Expect = 8e-13
Identities = 194/284 (68%), Gaps = 6/284 (2%)
Strand=Plus/Minus
Query 148893 GTATTCGAACAGCTTACTGAAAAACAACTTTCATTCTTCTGGCGACCAGAAGAAGTCGAT 148952
|| ||||| |||| | || |||||||| || ||||||||||| |||||||||||||||
Sbjct 984 GTGTTCGAGAAGCTGATCGAGAAACAACTCTCCTTCTTCTGGCGTCCAGAAGAAGTCGAT 925
Query 148953 TTGACTCTTGACTCTCAAGAATTTGATCGAATGCCCGAACACTGGAAA-CACGTGTTCAC 149011
|| | | ||| || | | | | ||||||| || || ||| || | ||||
Sbjct 924 GTGTCGCAAGACCGCGCTGACTATCAAGGCCTGCCCGAGCA-TGAAAAGCATATTTTCAT 866
Query 149012 GCAAAATCTGAAGTATCAATCACTGCTAGACTCAGTGCAGGGTCGTGCGCCTAATATCGC 149071
|| ||||||||||| | ||||| || || | ||||| ||| ||||| | ||
Sbjct 865 CAGCAACCTGAAGTATCAGACGCTGCTGGATTCCATCCAGGGCCGTAGCCCTAACGTGGC 806
Query 149072 GTTCTTGCCTAT-CTGT-AGTGACAACTCGCTTGAAAACTGGATCACTACGTGGGACTTC 149129
|| ||||| | ||| | || | | ||| |||| ||||||| || |||| ||
Sbjct 805 CTTGTTGCCGCTGGTGTCATTGCC--CGAGCTGGAAACCTGGATCGAGACCTGGGCGTTT 748
Query 149130 AGTGAAACTATTCACAGTCGCTCTTACACGCACATCATGCGCAA 149173
|| || || ||| ||||| ||||| |||||||| |||||
Sbjct 747 TCCGAGACCATACACTCGCGCTCATACACCCACATCATCCGCAA 704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 783249903091920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |