Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq5172 147 2e-30 >seq5172 Length=1594 Score = 147 bits (162), Expect = 2e-30 Identities = 424/641 (66%), Gaps = 16/641 (2%) Strand=Plus/Plus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 ||||||||| || || | ||||||||| || || ||||| |||| ||| ||||| Sbjct 961 TTTTTGATACTCAGAGACACGTTTTTCAAAGAAATTGGTTTTGCCTTGTAATGAAATCAG 1020 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCT-AGTA 12977 ||||||||| || || ||||||| | ||| ||||| | | | | | | |||| Sbjct 1021 TTCCATAAAGTCAAAGGGATTTTGAGCGTGATAC-ATTTTGGGCTCACCCAGTGTCAGTA 1079 Query 12978 ACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTA 13037 || | ||||||||||||||| |||||||||||||| | ||| |||||| || || | Sbjct 1080 GCAGGCGGTCAGCAACAAACTCGATGTACTGTTTCATCAGGTCAGCGTTCATACCGATCA 1139 Query 13038 ATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTA 13097 |||||||| || || || | ||| | | ||| || |||| || ||| || | Sbjct 1140 GGCGTACAGGCAAGGCATCGGTGACAAATTCCTGTTCAATTGCAACCGCGTCGGCAATAA 1199 Query 13098 TGTCTCTTATTACGTTCTCTAATGGAG--GATTTGATAGATGCTTAAACATCATACATGC 13155 | || | | ||||| |||| |||| | || |||| ||| || || || Sbjct 1200 TCTCACGCA-GGCGTTC-AGCCGGGAGCTTATTTAAAAGCTGCTGGTACAGCAAGCAGGC 1257 Query 13156 AAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGG 13215 || ||| |||| |||||||| | | || || || |||||||| | | ||||| Sbjct 1258 GAAGTCAGTATGCATGCCTTCATCGCGAGAGATCAGTTCATTTGAAAAACTCAAGCCCGG 1317 Query 13216 CATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA-AACGAACCCGaaaaaaaTATTC 13274 ||| || || || ||||||| ||| || || | |||| || ||| ||||| || || | Sbjct 1318 CATCAGGCCACGCTTTTTAAGCCAGAAAAT-GGAGCAGAAGCTACCAGAAAAGAAAATGC 1376 Query 13275 CTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCC 13334 |||||| || ||||| || | | | ||| || | | | ||| || |||| Sbjct 1377 CTTCAATGGCGGCAAAGGCGACAAGGCGCTCAGCAAAGCTGCCTTTT------TCGATCC 1430 Query 13335 ACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATA 13394 | ||||| | ||||| | | ||||| || |||| || ||| || | Sbjct 1431 AGCGCAGAGCCCACTCAGCTTTGCGGGTGACGCAAGGCAGGGTTTCAATCGCGCGGAACA 1490 Query 13395 AATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATA-AGCTATACATTTCT 13453 ||||||||| | |||| |||||||||||| | || || ||| || |||| Sbjct 1491 GGCGATTTTTTTCACTTGTGTCGCGAATATAAGTATCCAGCAGTAGAGC-GTAGGTTTCA 1549 Query 13454 GAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACA 13494 ||||| || || |||||| || || ||||| |||||||| Sbjct 1550 GAATGGATGTTCTCCATCATGATCTGAAAACCGTAAAAACA 1590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430933640132766