Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq5172 147 2e-30
>seq5172
Length=1594
Score = 147 bits (162), Expect = 2e-30
Identities = 424/641 (66%), Gaps = 16/641 (2%)
Strand=Plus/Plus
Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918
||||||||| || || | ||||||||| || || ||||| |||| ||| |||||
Sbjct 961 TTTTTGATACTCAGAGACACGTTTTTCAAAGAAATTGGTTTTGCCTTGTAATGAAATCAG 1020
Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCT-AGTA 12977
||||||||| || || ||||||| | ||| ||||| | | | | | | ||||
Sbjct 1021 TTCCATAAAGTCAAAGGGATTTTGAGCGTGATAC-ATTTTGGGCTCACCCAGTGTCAGTA 1079
Query 12978 ACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTA 13037
|| | ||||||||||||||| |||||||||||||| | ||| |||||| || || |
Sbjct 1080 GCAGGCGGTCAGCAACAAACTCGATGTACTGTTTCATCAGGTCAGCGTTCATACCGATCA 1139
Query 13038 ATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTA 13097
|||||||| || || || | ||| | | ||| || |||| || ||| || |
Sbjct 1140 GGCGTACAGGCAAGGCATCGGTGACAAATTCCTGTTCAATTGCAACCGCGTCGGCAATAA 1199
Query 13098 TGTCTCTTATTACGTTCTCTAATGGAG--GATTTGATAGATGCTTAAACATCATACATGC 13155
| || | | ||||| |||| |||| | || |||| ||| || || ||
Sbjct 1200 TCTCACGCA-GGCGTTC-AGCCGGGAGCTTATTTAAAAGCTGCTGGTACAGCAAGCAGGC 1257
Query 13156 AAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGG 13215
|| ||| |||| |||||||| | | || || || |||||||| | | |||||
Sbjct 1258 GAAGTCAGTATGCATGCCTTCATCGCGAGAGATCAGTTCATTTGAAAAACTCAAGCCCGG 1317
Query 13216 CATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA-AACGAACCCGaaaaaaaTATTC 13274
||| || || || ||||||| ||| || || | |||| || ||| ||||| || || |
Sbjct 1318 CATCAGGCCACGCTTTTTAAGCCAGAAAAT-GGAGCAGAAGCTACCAGAAAAGAAAATGC 1376
Query 13275 CTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCC 13334
|||||| || ||||| || | | | ||| || | | | ||| || ||||
Sbjct 1377 CTTCAATGGCGGCAAAGGCGACAAGGCGCTCAGCAAAGCTGCCTTTT------TCGATCC 1430
Query 13335 ACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATA 13394
| ||||| | ||||| | | ||||| || |||| || ||| || |
Sbjct 1431 AGCGCAGAGCCCACTCAGCTTTGCGGGTGACGCAAGGCAGGGTTTCAATCGCGCGGAACA 1490
Query 13395 AATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATA-AGCTATACATTTCT 13453
||||||||| | |||| |||||||||||| | || || ||| || ||||
Sbjct 1491 GGCGATTTTTTTCACTTGTGTCGCGAATATAAGTATCCAGCAGTAGAGC-GTAGGTTTCA 1549
Query 13454 GAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACA 13494
||||| || || |||||| || || ||||| ||||||||
Sbjct 1550 GAATGGATGTTCTCCATCATGATCTGAAAACCGTAAAAACA 1590
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430933640132766
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |