Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq2003 143 4e-29 seq3915 95.1 2e-14 >seq2003 Length=7520 Score = 143 bits (158), Expect = 4e-29 Identities = 306/452 (68%), Gaps = 4/452 (1%) Strand=Plus/Minus Query 43579 AAAGAGCGTGATATAGTCGTCATTTTTCAGACGCTCGAAAAACAGCTTGTTGATTTGGAT 43638 ||| || ||||| | | | | || |||| |||| | | | ||| |||||| || | Sbjct 7132 AAACAGAGTGATGTTCTGGCCCTTGATCAGGCGCTGGTACATCAGGCGGTTGATCTGCAC 7073 Query 43639 ACCGTAGTCAAGCTGGCGAATTCGATTTTCTTCCACGCCCTTGTTGTTTTTCAGAACAAG 43698 || || || || || || | || |||||||| ||||| |||||||||||| || || Sbjct 7072 GCCATAATCGAGATGACGCACACGGTTTTCTTCTACGCCGCGGTTGTTTTTCAGCACCAG 7013 Query 43699 GATTTTTTCAACTTCAAGATGCCACATTGGATAGTAAAGAGTAGCAGCGCCACCGCGTAC 43758 | | ||| |||||||| ||||||| || ||| | | || || || ||||| || || Sbjct 7012 CAGTGATTCGACTTCAAGGTGCCACAACGGGTAGAACAACGTCGCCGCCCCACCCCGCAC 6953 Query 43759 ACCACCCTGTGAGCAACTTTTTACCGCAGTCTGGAAATATTTCCAGAACGGAATAATACC 43818 ||| ||||| ||||| ||| ||||||| |||||| ||| ||||||| | ||| Sbjct 6952 ACCGCCCTGCGAGCAGGATTTCACCGCAGACTGGAACAGTTTGTAGAACGGCAGGCAACC 6893 Query 43819 AGTGTGGCGAACTTCACCACTTCGAAT-GCGAGAACCTTCGGCACGAATAGCGCCACCGT 43877 || || | |||| || | || || || || | || || || ||| ||| Sbjct 6892 GGTATGTTGCGCTTCGCCGCCACGTATCTCGCTGCCCAGC-GCGCGGATGCGGCCCGCGT 6834 Query 43878 TGATACCGATACCAGCGCGTTTGCTA-ATATAGTCAACGATTGAACTTGCGGTAGCGTTA 43936 ||| || || || ||||| |||| | | ||| | ||||| | || | ||| || || Sbjct 6833 TGACGCCTATGCCGGCGCG-TTGCGAGACATACTTCACGATCGCGCTGGTGGTTGCATTG 6775 Query 43937 ATGCTATCGAGTTCGTCGCCGCTTTCGATCTTCACGCATGAGCTAAACTGGCGAGTCGGG 43996 ||||| || || ||| | | |||||| ||||| ||||| |||||||| || || Sbjct 6774 ATGCTGTCCAGGCTGTCATCACACTCGATCAGTACGCAGGAGCTGAACTGGCGCGTAGGA 6715 Query 43997 GTTCGAACACCAGCAAGAATTGGCGTCGGTAG 44028 || || ||||| || | || ||||| || || Sbjct 6714 GTACGCACACCGGCCATGATAGGCGTAGGCAG 6683 >seq3915 Length=2367 Score = 95.1 bits (104), Expect = 2e-14 Identities = 198/291 (68%), Gaps = 12/291 (4%) Strand=Plus/Plus Query 41678 TTGATCCACAAACTTCTGCATGATAGCTACAATGTCCAAGTAACCCTTCATGCCGTGTTT 41737 ||| || |||||||||||||| | | | || | | || |||||| | ||| || Sbjct 1732 TTGGTCGACAAACTTCTGCATCACACCGACCAGCTTCAGGTAACCGT------CGTTGTT 1785 Query 41738 GGTCATCTGCCAAGCTGTCTCATACTCGCTACCAAGCATGTCTACCTCAGGCACTAGCTG 41797 | ||| | ||| | || ||||| | | || || | ||||||||||| ||| Sbjct 1786 CGGCATTTTCCACAGTAACTGATACTGGTCGCGCAGGCGCTCAATCTCAGGCACTACCTG 1845 Query 41798 ATTAAAGACACCATCTTTCGATTGCTTGGTGCTCACTAGGCCGCGCGGTGGCTCGATACC 41857 | || || ||||| || |||||| ||| ||||| ||||||||||||||||| Sbjct 1846 GCGCAGGATGCCGTCTTTGGACTGCTTGACCGACACCAGGCCACGCGGTGGCTCGATACC 1905 Query 41858 GTTTGTGCTGTTGGTGATCTG--TGAACTACTCTCACAAGGCATAAATGCGCTTAGAGTA 41915 ||| ||| ||||| |||||| || || |||| ||||||| | ||| | || || Sbjct 1906 GTTGGTGGCGTTGGCGATCTGGCTGGAC--GTCTCTGAAGGCATCAGCGCGGTCAGGGTG 1963 Query 41916 TCGTTTCGCAGGCCGTGCTGTTTG-ATCTCAGCTCGCAGCCATTCCCAATC 41965 ||| |||| ||| | || | || ||||| || ||||| | |||||| || Sbjct 1964 GAGTTACGCAAGCCAT-CTTTCTGAATCTCGGCGCGCAGGCTTTCCCAGTC 2013 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 40715 CTGGGTGCCTTTCAGGTGAAGCTGTTCATCCCGCGCAATCAGACGCATGATCTTAGCGTT 40774 ||||||||| | ||||| || ||| || |||||||| || || |||||||| || || Sbjct 349 CTGGGTGCCGGTGAGGTGCAGGGCTTCGTCACGCGCAATGAGGCGGATGATCTTGGCATT 408 Query 40775 GCCTTCCATGATACCACGCTCACCGAATGAGAACGTGCAAGCAAAGCTAACATAGAAACG 40834 ||||||||| | ||||| | || | ||||| ||| |||||||| || || || || Sbjct 409 GCCTTCCATCACCTTGCGCTCGGCAAACGCGAACGAGCAGGCAAAGCTGACGTAAAAGCG 468 Query 40835 AATCGCTTC 40843 || ||||| Sbjct 469 GATGGCTTC 477 Score = 84.2 bits (92), Expect = 3e-11 Identities = 230/345 (67%), Gaps = 8/345 (2%) Strand=Plus/Plus Query 41033 ATCAAACACAGCAGACGGATCAACATAGAGATTCCGCATGATGTGGGTATAAGAACGGCT 41092 |||||||| |||| || ||| || ||| || ||||||||||| || || || Sbjct 673 ATCAAACATGACAGAAGGGTCATTGACGATATTGCGGATGATGTGGGTGTATGAGCGCGA 732 Query 41093 ATGAATTGTCTCACTGAAACTCCATGTGGTGATCCAAGTTTCAAGCGCGACATCAGATAC 41152 || || ||||| || ||| || |||||| ||||| ||| || || || Sbjct 733 GTGTATGGTCTCGGAAAACGCCCAGGTCTCGATCCAGGTTTCCAGCTCGGGCAATGACAC 792 Query 41153 GATTGGCAAGAATACCAAGTTAGGTGCGCGACCTTGTACCGAGTCAAGCAGACTTTGATA 41212 | ||||| || ||| |||||| || || || | || || ||||| | ||||| Sbjct 793 CAGCGGCAACAAGGCCACGTTAGGGCTACGGCCCTGGATGGAATCCAGCAGCGTCTGATA 852 Query 41213 TTTCAAGTTT-TGAGTGAAAACATGTTGTTCGGCTTCACTCAGTTGATTATAGTCGATTG 41271 |||| ||| ||| |||||| ||| | ||| || ||| | |||||| | | Sbjct 853 CTTCAGGTTGCTGA-TGAAAATATGCTTTTCATGCTCGGGCAGGCCTTGATAGTC-AGCG 910 Query 41272 CATCCTTA-GACAAATCCACTTCTTCGGGACGCCAGAAAAATGAAAGTTGCTTTTCTGTA 41330 | ||| |||| ||| |||||||| ||||||||||| || || ||||| || || | Sbjct 911 CGGTCTTGCGACACATCGACTTCTTCTGGACGCCAGAAGAAGGAGAGTTGTTTCTCGATC 970 Query 41331 AGCTTATCAATTGCCGGATGTTTTACTGTT--TCATATCGAGCCA 41373 ||||| || | |||||| ||| ||||| ||||| || |||| Sbjct 971 AGCTTCTCGAACACCGGATATTT--CTGTTGGTCATACCGCGCCA 1013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 746134210403920