Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_005294.1
Length=42935
Score E
Sequences producing significant alignments: (Bits) Value
seq7973 82.4 2e-11
>seq7973
Length=1071
Score = 82.4 bits (90), Expect = 2e-11
Identities = 173/258 (67%), Gaps = 0/258 (0%)
Strand=Plus/Plus
Query 2061 TTTGATTTCTTCTAAGTTTACTCGGAAGAACTCTTTGCGAGAATTTACTTTGTTGACTTC 2120
|| |||||||| || | || | ||||||||||||||| | ||||| ||||| | |
Sbjct 225 TTCGATTTCTTTTAGAGTCACATGAAAGAACTCTTTGCGAAAGTTTACCTTGTTTAGTCT 284
Query 2121 TTGTTTTCTAAAATAGTTGTGTAGAGTTGTTTCAAGAGCAGGAGCATCTTCGCTGAAAAT 2180
||| |||| || ||||| | |||| | || ||||||| || | ||
Sbjct 285 GCGTTCGTTAAATGCCTTATGTAGGGCATTTTCTAATGCTGGAGCATTTTGAGAATATAT 344
Query 2181 TAGAGCGTGTACATCAAACGGGAATGGAACAGAAGCACTGCTCAATTCAGAGATACGATC 2240
| || || |||||||| | || |||||||| ||| | | ||| || |||||
Sbjct 345 CATTGCATGAACATCAAATGAAAAGGGAACAGATGCATCTCCGAGTTCTTTGACTCGATC 404
Query 2241 CATTGGCTCTAGACGTCTAGTCATACCAATTTTATAAACATTTTCTCCGAAAGAGCCAAT 2300
||| || || || || | |||||| ||||| || || |||| ||| || || || || ||
Sbjct 405 CATGGGATCGAGGCGACGAGTCATTCCAATCTTGTAGACATCTTCACCAAAGGAACCGAT 464
Query 2301 ATTAGAAATGATATAGAC 2318
|| || || | |||||
Sbjct 465 GTTTGAGATAACGTAGAC 482
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 137255267911662
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |