Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_005294.1 Length=42935 Score E Sequences producing significant alignments: (Bits) Value seq7973 82.4 2e-11 >seq7973 Length=1071 Score = 82.4 bits (90), Expect = 2e-11 Identities = 173/258 (67%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 2061 TTTGATTTCTTCTAAGTTTACTCGGAAGAACTCTTTGCGAGAATTTACTTTGTTGACTTC 2120 || |||||||| || | || | ||||||||||||||| | ||||| ||||| | | Sbjct 225 TTCGATTTCTTTTAGAGTCACATGAAAGAACTCTTTGCGAAAGTTTACCTTGTTTAGTCT 284 Query 2121 TTGTTTTCTAAAATAGTTGTGTAGAGTTGTTTCAAGAGCAGGAGCATCTTCGCTGAAAAT 2180 ||| |||| || ||||| | |||| | || ||||||| || | || Sbjct 285 GCGTTCGTTAAATGCCTTATGTAGGGCATTTTCTAATGCTGGAGCATTTTGAGAATATAT 344 Query 2181 TAGAGCGTGTACATCAAACGGGAATGGAACAGAAGCACTGCTCAATTCAGAGATACGATC 2240 | || || |||||||| | || |||||||| ||| | | ||| || ||||| Sbjct 345 CATTGCATGAACATCAAATGAAAAGGGAACAGATGCATCTCCGAGTTCTTTGACTCGATC 404 Query 2241 CATTGGCTCTAGACGTCTAGTCATACCAATTTTATAAACATTTTCTCCGAAAGAGCCAAT 2300 ||| || || || || | |||||| ||||| || || |||| ||| || || || || || Sbjct 405 CATGGGATCGAGGCGACGAGTCATTCCAATCTTGTAGACATCTTCACCAAAGGAACCGAT 464 Query 2301 ATTAGAAATGATATAGAC 2318 || || || | ||||| Sbjct 465 GTTTGAGATAACGTAGAC 482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137255267911662