Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq478 123 2e-23 >seq478 Length=29740 Score = 123 bits (136), Expect = 2e-23 Identities = 326/487 (67%), Gaps = 27/487 (6%) Strand=Plus/Minus Query 25425 AGCGGTTCTACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCC 25484 |||||||| ||||| | ||| || || || ||||| || | || | |||||| || Sbjct 15630 AGCGGTTCCACGTGGTTCAGATACACATGCGCGTCACCAATGACATGAATAAACTCGCCG 15571 Query 25485 GGTTCTAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTA 25544 |||| | || | || | |||| | | ||| || || |||||||||||| || Sbjct 15570 GGTTTCAAACCTGCCACCTGTGCCACTAAGCGCGTTAGCAGCGCGTAGCTGGCGATATTG 15511 Query 25545 AAGGGTACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTC 25604 || || || |||| |||||||| | | || | |||||| | ||| ||||| | ||| | Sbjct 15510 AATGGGACGCCGAGCCCCATGT-CAGCTGAGCGCTGGTACATCTGGCACGACAACTCACC 15452 Query 25605 GTC-GCTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGC-CCAAG 25662 ||| ||| |||||||||||||| | ||| |||||| || || || || | | ||| Sbjct 15451 GTCAGCT-ACGTAAAACTGACAGAACATGTGGCACGGCGGCAGCGCCAT--GTCATTAAG 15395 Query 25663 -TCTTTAGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGG-TTGTCC-----CT 25715 || || |||||||| ||| | ||| | | || ||| |||||| | Sbjct 15394 ATCAGCCGGATTCCAGGCCGACAGCACGATACGGCGATCAGAAGGGTTTGTCCGGAGTTT 15335 Query 25716 G---ATAAGATCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCT 25772 | || | || ||| ||||| ||||| || || | ||||| || Sbjct 15334 GTGTATCACCTCAGCG---------AGCTGGTCCACGCCTTGGCCTGTATAGTCGGCATG 15284 Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 |||||| ||||||| ||| ||||||| | ||||||||| || || || ||||| ||||| Sbjct 15283 CATGTCGGTGTACTTTGCACCGAAATGACGCCACTGGAAACCATATACTGGTCCAAGGTC 15224 Query 25833 TCCATCTTCCCTGTG-CTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 ||| | |||| ||| || ||||| || | |||| | || | || |||||| ||| Sbjct 15223 TCCTACCTCCC-GTGACTGTAAGCCTCTACTGTCCAGGTACTCACGCGATCCATTGCCGT 15165 Query 25892 CCCAGAT 25898 ||||||| Sbjct 15164 CCCAGAT 15158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340099118001159