Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_005856.1
Length=94800
Score E
Sequences producing significant alignments: (Bits) Value
seq6744 129 4e-25
seq1469 86.0 4e-12
>seq6744
Length=1221
Score = 129 bits (142), Expect = 4e-25
Identities = 274/391 (70%), Gaps = 21/391 (5%)
Strand=Plus/Plus
Query 8225 GCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGA 8284
|| || ||||| || |||||||||||||| || | |||||| | ||| |||||| |||||
Sbjct 250 GCGTCCACACCGATATGGGCCTTCATGCCGAAATACCACTGTTGGCCCTTCTTGCTCTGA 309
Query 8285 TGCATCTCCGGATCGCG-TTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGAT 8343
|||||||| || || || | || ||| |||||||||||||||||| || | || |
Sbjct 310 TGCATCTCGGGGTCACGCTGGCCGCT-GGCGTTCTTGGTCGAGCTGGGCGCAGCGATCAG 368
Query 8344 GGTGGCATCGACCAAGGTGCCTTGAGTCATCA--TG-ACGCCTGCTTCGGCCAGC--CAG 8398
|||||||| |||| ||||| | || | | || | ||| ||| |||| || |||
Sbjct 369 CGTGGCATCCACCACCGTGCC---ACTCTTGAGCTGCAGGCC--CTT-GGCCTGCAACAG 422
Query 8399 CG-ATTGATGGTCTTGAACAATTGGCGG-GCCAGTTGATGCTGCTCCAGCAGGTGGCGGA 8456
|| |||| |||| |||| || | || ||||| | ||||||||||||| ||||| |
Sbjct 423 CGCGTTGACGGTC-TGAAGGATCAGTGGCGCCAGCTTGTGCTGCTCCAGCACATGGCGAA 481
Query 8457 AATTCATGATGGTGGTGCGGTCCGGCAA-GGCGCTATCCAGGGAT--AACCGGGCAAACA 8513
| | |||||| | ||| ||||| || | |||| | | | ||| |||
Sbjct 482 ACCGAAGAATGGTGCTCTCGTCGGGCAACCGCTCGGCCCAGCCCTCAAGGCCGGCGAACT 541
Query 8514 GACG-CATGGAGGCGATTTCGTACAGAGCATCTTCCATCGCGCCATCGCTCAGGTTGTAC 8572
||| | | ||| | |||| ||| || ||||||||||| || |||||| ||
Sbjct 542 CACGAAACAGCGGC-ACATCGTGCAGGGCTTCTTCCATCGCCGGGTCCGAGAGGTTGAAC 600
Query 8573 CAATGCTGCATGCAGTGAATGCGTAGCATGG 8603
|| || |||||| | |||||||| | |||||
Sbjct 601 CACTGTTGCATGAAATGAATGCGCAACATGG 631
>seq1469
Length=11399
Score = 86.0 bits (94), Expect = 4e-12
Identities = 275/421 (65%), Gaps = 17/421 (4%)
Strand=Plus/Minus
Query 72256 TGATTATGATCGACTACCTGCAACTTATGCGCGTCCCCGAGCTGCAA-------GATAAC 72308
||||| |||||||||| |||| | ||| |||| || |||| || |||
Sbjct 8387 TGATTGTGATCGACTATTTGCAGTTGATGA-CGTCACCCTCAGGCAAAGCCGGTGAAAAC 8329
Query 72309 CGAACGCTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAA 72368
|| || ||||| | || || || ||||| || || || |||| || || | |
Sbjct 8328 CGGGCGACCGAAATCTCTGAAATCTCGCGCTCGCTCAAAGCCCTGGCCAAAGAGCTCGAT 8269
Query 72369 GTACCGGTGGTGGCATTGTCACAACTTAATCGATCGCTTGAAC-AGCGTGCGGACAAACG 72427
|| || ||| | || | ||||| | || || | || || || ||||| | || |||||
Sbjct 8268 GTGCCTGTGATTGCTATTTCACAGTTGAACCG-TAGCGTGGACCAGCGTCCCGATAAACG 8210
Query 72428 ACCGGTAAATTCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTAT 72487
||||| | || | |||||||| || || ||||||||||| || ||| |||||||
Sbjct 8209 CCCGGTCATGAGTGACCTGCGTGAATCCGGGGCTATTGAGCAGGATGCTGACTTGATTAT 8150
Query 72488 GTTTCTGTATCGCGACGAAGTTTATCACCCGGATAGCGAAATGAAGGGCATTGCCGAGGT 72547
||| | || || ||||| || ||||||| || | || || | || || |
Sbjct 8149 GTTCGTATACCGTGACGAGTACTACAACCCGGACAGTGCTGAAAAAGGTACGGCGGAAAT 8090
Query 72548 AATTATCGGAAAGCAACGAAATGGCCCAATTGGCACGGTGAGATTGGCTTTTAACG--GC 72605
|| || | ||||| || || || |||||||| || | || | |||| | ||
Sbjct 8089 TATCATTGCCAAGCAGCGTAACGGTCCAATTGGTCGTGTACGGCTGACCTTTATGGGTGC 8030
Query 72606 CAATACTCACGGTTTGATAACTATGCCGGTGCTG---ACTGGCAAGAGGATTATTAATGC 72662
||| |||||||||| ||||||||| ||| | || || || || |||||| ||
Sbjct 8029 GCATA--CACGGTTTGAAAACTATGCCAATGCCGCCTACATGCCTGATGAGTATTAACGC 7972
Query 72663 A 72663
|
Sbjct 7971 A 7971
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 303200893011843
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |