Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq6744 129 4e-25 seq1469 86.0 4e-12 >seq6744 Length=1221 Score = 129 bits (142), Expect = 4e-25 Identities = 274/391 (70%), Gaps = 21/391 (5%) Strand=Plus/Plus Query 8225 GCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGA 8284 || || ||||| || |||||||||||||| || | |||||| | ||| |||||| ||||| Sbjct 250 GCGTCCACACCGATATGGGCCTTCATGCCGAAATACCACTGTTGGCCCTTCTTGCTCTGA 309 Query 8285 TGCATCTCCGGATCGCG-TTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGAT 8343 |||||||| || || || | || ||| |||||||||||||||||| || | || | Sbjct 310 TGCATCTCGGGGTCACGCTGGCCGCT-GGCGTTCTTGGTCGAGCTGGGCGCAGCGATCAG 368 Query 8344 GGTGGCATCGACCAAGGTGCCTTGAGTCATCA--TG-ACGCCTGCTTCGGCCAGC--CAG 8398 |||||||| |||| ||||| | || | | || | ||| ||| |||| || ||| Sbjct 369 CGTGGCATCCACCACCGTGCC---ACTCTTGAGCTGCAGGCC--CTT-GGCCTGCAACAG 422 Query 8399 CG-ATTGATGGTCTTGAACAATTGGCGG-GCCAGTTGATGCTGCTCCAGCAGGTGGCGGA 8456 || |||| |||| |||| || | || ||||| | ||||||||||||| ||||| | Sbjct 423 CGCGTTGACGGTC-TGAAGGATCAGTGGCGCCAGCTTGTGCTGCTCCAGCACATGGCGAA 481 Query 8457 AATTCATGATGGTGGTGCGGTCCGGCAA-GGCGCTATCCAGGGAT--AACCGGGCAAACA 8513 | | |||||| | ||| ||||| || | |||| | | | ||| ||| Sbjct 482 ACCGAAGAATGGTGCTCTCGTCGGGCAACCGCTCGGCCCAGCCCTCAAGGCCGGCGAACT 541 Query 8514 GACG-CATGGAGGCGATTTCGTACAGAGCATCTTCCATCGCGCCATCGCTCAGGTTGTAC 8572 ||| | | ||| | |||| ||| || ||||||||||| || |||||| || Sbjct 542 CACGAAACAGCGGC-ACATCGTGCAGGGCTTCTTCCATCGCCGGGTCCGAGAGGTTGAAC 600 Query 8573 CAATGCTGCATGCAGTGAATGCGTAGCATGG 8603 || || |||||| | |||||||| | ||||| Sbjct 601 CACTGTTGCATGAAATGAATGCGCAACATGG 631 >seq1469 Length=11399 Score = 86.0 bits (94), Expect = 4e-12 Identities = 275/421 (65%), Gaps = 17/421 (4%) Strand=Plus/Minus Query 72256 TGATTATGATCGACTACCTGCAACTTATGCGCGTCCCCGAGCTGCAA-------GATAAC 72308 ||||| |||||||||| |||| | ||| |||| || |||| || ||| Sbjct 8387 TGATTGTGATCGACTATTTGCAGTTGATGA-CGTCACCCTCAGGCAAAGCCGGTGAAAAC 8329 Query 72309 CGAACGCTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAA 72368 || || ||||| | || || || ||||| || || || |||| || || | | Sbjct 8328 CGGGCGACCGAAATCTCTGAAATCTCGCGCTCGCTCAAAGCCCTGGCCAAAGAGCTCGAT 8269 Query 72369 GTACCGGTGGTGGCATTGTCACAACTTAATCGATCGCTTGAAC-AGCGTGCGGACAAACG 72427 || || ||| | || | ||||| | || || | || || || ||||| | || ||||| Sbjct 8268 GTGCCTGTGATTGCTATTTCACAGTTGAACCG-TAGCGTGGACCAGCGTCCCGATAAACG 8210 Query 72428 ACCGGTAAATTCAGATTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTAT 72487 ||||| | || | |||||||| || || ||||||||||| || ||| ||||||| Sbjct 8209 CCCGGTCATGAGTGACCTGCGTGAATCCGGGGCTATTGAGCAGGATGCTGACTTGATTAT 8150 Query 72488 GTTTCTGTATCGCGACGAAGTTTATCACCCGGATAGCGAAATGAAGGGCATTGCCGAGGT 72547 ||| | || || ||||| || ||||||| || | || || | || || | Sbjct 8149 GTTCGTATACCGTGACGAGTACTACAACCCGGACAGTGCTGAAAAAGGTACGGCGGAAAT 8090 Query 72548 AATTATCGGAAAGCAACGAAATGGCCCAATTGGCACGGTGAGATTGGCTTTTAACG--GC 72605 || || | ||||| || || || |||||||| || | || | |||| | || Sbjct 8089 TATCATTGCCAAGCAGCGTAACGGTCCAATTGGTCGTGTACGGCTGACCTTTATGGGTGC 8030 Query 72606 CAATACTCACGGTTTGATAACTATGCCGGTGCTG---ACTGGCAAGAGGATTATTAATGC 72662 ||| |||||||||| ||||||||| ||| | || || || || |||||| || Sbjct 8029 GCATA--CACGGTTTGAAAACTATGCCAATGCCGCCTACATGCCTGATGAGTATTAACGC 7972 Query 72663 A 72663 | Sbjct 7971 A 7971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303200893011843