Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_005880.2
Length=148317
Score E
Sequences producing significant alignments: (Bits) Value
seq6517 152 5e-32
>seq6517
Length=1260
Score = 152 bits (168), Expect = 5e-32
Identities = 413/623 (66%), Gaps = 23/623 (4%)
Strand=Plus/Minus
Query 135514 AGTTTTAAAGGTAGTGATACAGTACCTGTAGTGGATTTCTTAGAATCATATTACAATGCA 135573
|| |||| ||||| |||||| | || | |||| | || | |||||||||||
Sbjct 801 AGCTTTACAGGTACAGATACAATTCCGACTATCAATTTTCTGGAGACCTATTACAATGCT 742
Query 135574 GACGTAGAGAAGGAAATGGTTGTTGCTTCTATCCCTGCTACTGAGCACTCAGTAATGTGT 135633
|| ||| | || | || | || ||| | | || || |||||||| || |||||
Sbjct 741 GATTCAGACACCGAGCTTGTGGGTGGCTCTGTGGCAGCAACCGAGCACTCTGTGATGTGC 682
Query 135634 GCAAATGGTAATTATGAAACCATGGATGAGTATGAAACATATAAACGTATGTTAACAGAA 135693
| |||| |||| || || | |||||| | ||||| || | ||||||
Sbjct 681 ---ATGGGTACAAATGA------GGGCGAATTTGAAACTTTCAAACGCCTGATTACAGAA 631
Query 135694 ATATATCCAACAGGCATTTTCTCTATTGTGTCTGATACTTGGGACTTTTGG--GGTAATA 135751
| ||||| | ||| ||| | |||||||||||||| ||||||||||| ||| ||| ||
Sbjct 630 GTGTATCCGAAAGGTATTGTTTCTATTGTGTCTGACACTTGGGACTTATGGAAAGTATTA 571
Query 135752 TGACTAAAACTTTACCTAGATTAAAGGATATTATTATGGAACGTAATGGTAAAGTAGTAA 135811
|| || |||||| ||||| || || || | | || || |||||||| |
Sbjct 570 --ACCGAATACTTACCTGCCTTAAAAAATGAAATAGTGAATAGAAACGGCAAAGTAGTGA 513
Query 135812 TCAGACCTGATAGTGGAGACCCTGTTAAAATTATTTGCGGAGACCCTGATGCAGA---CA 135868
| |||| ||| || |||||||| | ||||| || || | ||||| | | | ||
Sbjct 512 TTCGACCGGATTCGGGCGACCCTGTGGATATTATCTGTGGCAATCCTGACGGAAAAACCA 453
Query 135869 CTGAATATGAACGTAAAGGTGCAGTAGAAGTGCTTTGGGATACATTTGGAGGTACTGAAA 135928
| ||| ||| ||||| | | || || | |||||||| || || |||| |
Sbjct 452 CCGAA---GAAAAAAAAGGGGTTATTGAGTTGTTATGGGATACCTTCGGTGGTATCACCA 396
Query 135929 CTGAAAAAGGGTACAAAGTATTA-GATGAACATGTAGGATTAATTTATGGAGACTCTATT 135987
|| |||||| || |||| |||| | ||| |||| |||||||| || ||
Sbjct 395 ATGCAAAAGGCTATAAAGAATTACTACCCACA-ATAGGGGCCATTTATGGCGATAGCATC 337
Query 135988 AACTAT-GAACGTGCTCAACAAATTTGTGAAGGATTAAAAGAAAAAGGTTTTGCAAGTAT 136046
|| ||| | | | ||| |||||| |||||| ||||||| ||||||| ||||| ||
Sbjct 336 AA-TATAGCAAGAGCTACACAAATCTGTGAACGATTAAAGCAAAAAGGCTTTGCCTCTAC 278
Query 136047 TAATGTTGTATTAGGTGTAGGTAGTTTCTCTTACCAATTTAATACTCGTGATACCCACGG 136106
|||||||| |||| || || | |||| |||| ||||| ||||||||| |||
Sbjct 277 CAATGTTGTGCTAGGCGTTGGCTCATATACTTATCAATACAATACCCGTGATACCTTCGG 218
Query 136107 GTTTGCAATCAAAGCAACGTATG 136129
||||| || ||||| || ||||
Sbjct 217 CTTTGCCATGAAAGCCACTTATG 195
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 474431341784360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |