Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq45 123 4e-24
seq77 118 2e-22
>seq45
Length=70982
Score = 123 bits (136), Expect = 4e-24
Identities = 184/261 (70%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||||||||||| |||||| || |||||||| || || |||||||| || ||
Sbjct 48869 CGCCAAGCGTCATCGCAAGGTTCTTCGTGACAACATCCAGGGCATTACCAAGCCTGCGAT 48928
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||||||||| || ||||| || || || ||||| | ||||| | | || |||||||
Sbjct 48929 CCGTCGTCTCGCACGTCGCGGCGGTGTGAAGCGCATTTCTGGCCTCATTTACGAAGAGAC 48988
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| || | ||| | |||||| ||| ||| |||| || | | ||| || ||
Sbjct 48989 CCGTGGCGTCCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCAGTGACCTACACGGA 49048
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || || || || | ||||| |||| || ||| | || || || ||
Sbjct 49049 GCACGCCCGCCGCAAAACGGTGACGGCTATGGACGTCGTGTACGCACTCAAGCGCCAGGG 49108
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
||| | | || ||||| ||
Sbjct 49109 CCGCACTCTGTACGGTTTCGG 49129
>seq77
Length=94558
Score = 118 bits (130), Expect = 2e-22
Identities = 185/262 (71%), Gaps = 2/262 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGC-AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||||||| || || || || || |||||||| || || |||||||| || |
Sbjct 56745 CGCCAAGCGTCATCGCAAGGTC-CTACGCGACAACATCCAGGGCATTACCAAGCCTGCGA 56803
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||||||||| ||||||||||| || || |||||| |||| || | | || || ||||
Sbjct 56804 TCCGTCGTCTCGCTCGTCGTGGCGGTGTGAAGCGTATCTCGGGTCTCATTTACGAGGAGA 56863
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|||| || | ||| | |||||| ||| ||| |||| || | || || || |
Sbjct 56864 CGCGTGGGGTGCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCGGTCACATACACGG 56923
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
| || || ||||| || || || | ||||| |||| || || | || || || |
Sbjct 56924 AACATGCGCGCCGTAAAACCGTGACGGCTATGGACGTCGTGTACGCGCTTAAGCGCCAGG 56983
Query 16671 GCCGTAAGATTTATGGTTTTGG 16692
| || | | | || || |||||
Sbjct 56984 GACGCACGCTGTACGGCTTTGG 57005
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79066712488119
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |