Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq5172 95.1 1e-14 >seq5172 Length=1594 Score = 95.1 bits (104), Expect = 1e-14 Identities = 291/445 (65%), Gaps = 14/445 (3%) Strand=Plus/Plus Query 21184 TTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGA 21243 ||||||||| ||| || | |||||| || ||||| || || |||| ||||| || Sbjct 961 TTTTTGATACTCAGAGACACGTTTTTCAAAGAAATTGGTTTTGCCTTGTAATGAAATCAG 1020 Query 21244 TTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGT-TCTGATA 21302 ||||||||| ||||| ||||||| || | | | ||||| ||||||| || | || Sbjct 1021 TTCCATAAAGTCAAAGGGATTTTGAGCGTGATACATTTTGGGCTCACCCAGTGTCAG-TA 1079 Query 21303 ATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCA 21362 | | || || ||||| || || || || ||| | ||| ||||||||||||| Sbjct 1080 GCAGGCGGTCAGCAACAAACTCGATGTACTGTTTCATCAGGTCAGCGTTCATACCGATCA 1139 Query 21363 ATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTA 21422 |||||| | || | || | ||| | ||| || | || || || |||| | Sbjct 1140 GGCGTACAGGCAAGGCATCGGTGACAAATTCCTGTTCAATTGCAACCGCGTCGGCAATAA 1199 Query 21423 TATTTATTATCCTAGATGTACTAGGGGGA-----TACAATAATTGTTTAAACATCAAACA 21477 | | | || || | |||| | || | || | ||| ||| || Sbjct 1200 TCTCA-----CGCAGGCGTTCAGCCGGGAGCTTATTTAAAAGCTGCTGGTACAGCAAGCA 1254 Query 21478 TGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACC 21537 || || ||| ||||| |||||||| | | || | |||||| ||||| | || || Sbjct 1255 GGCGAAGTCAGTATGCATGCCTTCATCGCGAGAGATCAGTTCATTTGAAAAACTCAAGCC 1314 Query 21538 GGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAAAA 21596 ||||| | || | |||||| | ||| || || || ||| | ||| || |||||||||| Sbjct 1315 CGGCATCAGGCCACGCTTTTTAAGCCAGAAAATGGA-GCAGAAGCTACCAGAAAAGAAAA 1373 Query 21597 TGCCCTCAACGGCAGCAAATGCAAC 21621 |||| |||| ||| ||||| || || Sbjct 1374 TGCCTTCAATGGCGGCAAAGGCGAC 1398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531839079560920