Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq179 154 2e-32
seq5172 150 2e-31
seq69 143 3e-29
seq8027 98.7 1e-15
>seq179
Length=46302
Score = 154 bits (170), Expect = 2e-32
Identities = 761/1204 (63%), Gaps = 8/1204 (1%)
Strand=Plus/Plus
Query 62632 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 62691
|||| || || || |||||||| |||||||| || || | |||| | ||| ||||| |
Sbjct 21178 CGTAGTAGATCGTCTCGAAGATGTTCTTATTCAGCTCCCGCGCTTGCTCGCTTTCAAACG 21237
Query 62692 GATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62751
|| || | |||||||||||| ||||| | || || |||||||| |||| || | |
Sbjct 21238 CGTAGTTCATGAGAATAAACGCATCCGCGAGACCCTGGACACCAATGCCGACTGGACGGT 21297
Query 62752 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 62811
| | | | || || | |||||||| || || || ||||| | || || | || |
Sbjct 21298 GGCGCATGTTGGACGTGCGAGCTTCTGCAACGGGGTAGTAATTCACCTCAATCACCTTGT 21357
Query 62812 TGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT 62871
| || || | | || || ||| || | ||| || ||| ||| || |
Sbjct 21358 TCAGGTTACGCGTCACGACGCTGGTCACGTCGTACAGCTTCTTGTAATTAAACACGCCGT 21417
Query 62872 CTATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 62931
|| |||||| || || || || || |||| |||||| || || || |||| |
Sbjct 21418 CTTCAACAAACTTGGGCAGCGCTACCGACGCCAAATTACACACCGCCACTTCATCCGGCG 21477
Query 62932 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTT 62991
|| | | || | ||| ||| | ||||| || ||| || || | || || |
Sbjct 21478 ACGTGAACTCCATCACTTCACAGCACAAGTTACTGGACCGGATCGTGCCAAGGTTCTGCT 21537
Query 62992 GATTACTCTTTTTGTTACAC-GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 63050
| || | ||| | | ||| ||||||||||| || || || || || |||||||||
Sbjct 21538 GGTT-CGATTTGCGGTTCACTGCATCCTTATAGAGCATAAAGGGCACTCCCGTTTCAATC 21596
Query 63051 TGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCCT 63109
|| | || | ||||| ||| | | || | || || || | || | | | |
Sbjct 21597 TGCGCATCCAAGATCGCAAACCACAGCTGCTGG-GCATTGATCGTC--TTCCTCGCCCGT 21653
Query 63110 TTCTCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT 63167
||||| ||||| | |||||| || |||||||| ||||| | || ||
Sbjct 21654 CCCTCTTGTTCGTACTTTTCATACAAAGTCTCAAACTCGTCGCCCCAGTACTCGTACAGC 21713
Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227
|| ||| ||||| ||||| | ||| ||||| || | | | ||| ||||||||
Sbjct 21714 CCTGGAGCTTCATTTGGACAGAACAAACTCCACTTACCATTTGCTTCCACCCGTTTCATG 21773
Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287
|| ||||| || | ||| | || | || | || | | | ||| || || ||
Sbjct 21774 AATAGATCGGGTACCCACAACGCAAAGAACAAGTCCCGCGCCCGATGGAGTTCATTGCCA 21833
Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347
||| || | |||||| ||| | | | || | ||||||||||||||||| ||
Sbjct 21834 TGATTTTTCCGCAAATCGAGAAACTCAAACACGTCTGCGTGCCACGGTTCCAAGTAGATC 21893
Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407
|| | ||| |||||| || || ||||| | ||||| || |||| |||| |
Sbjct 21894 GCAAACGATCCTTTGCGTTTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCATTAAAC 21953
Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467
|| | | ||| || ||||| ||||| || ||||| || || ||| |||||
Sbjct 21954 ACGCGAAGCATGGGGATAATCCCGTTCGAAGAGCCATTAGTGCCTCGGATGTAGCTATTC 22013
Query 63468 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63527
|||| || ||||| || | || || || |||||| ||| || || | ||
Sbjct 22014 GTGGCCCGGATATTGTGCATACTAATGCCAATCCCTCCTGCCCATTTCGAAATGCACGCA 22073
Query 63528 CATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63587
||| |||| || || |||||||| || || ||| |||||| |||| | || |||
Sbjct 22074 CATTGTTTCAAGGTATCATAGATTCCTTCAATGGAATCATCTTTCATAGCCAATAAAAAG 22133
Query 63588 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63647
|| ||||| |||| | ||| || || |||||||| | || || | || || |||
Sbjct 22134 CACGAAGACAATTGGGGGCGAGGGGTACCGGCATTAAACAGCGTCGGGGTCGCATGGGTA 22193
Query 63648 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGA 63707
|| | || | || | || | || || || | || | | || ||| || |||
Sbjct 22194 AAAAACTTCTGCGACATTAATTCATATGTTTCCAACGCAGCGATAATGTCCTGTTTATGG 22253
Query 63708 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 63767
|| || | ||||| || | | ||| || || || | ||| |||| || ||| |
Sbjct 22254 ATGCCAATCGCGACTCGTAAAATCATCTGTTGCGGCCGTTCGACGACTTTACCGTTGACC 22313
Query 63768 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 63827
||||| || | ||| | |||||||| |||||||||| ||| || || ||
Sbjct 22314 CGAAACAAATAACCTCGTTCGAGGGTTTTAAACCCAAAATAGTCATATTCGAAATCCCGG 22373
Query 63828 TCGT 63831
||||
Sbjct 22374 TCGT 22377
>seq5172
Length=1594
Score = 150 bits (166), Expect = 2e-31
Identities = 427/647 (66%), Gaps = 13/647 (2%)
Strand=Plus/Plus
Query 33003 AACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAA 33062
||| ||| |||||| || ||| ||||||||||| || ||||| ||||| |||| ||
Sbjct 952 AACACCCGCTTTTTGATACTCAGAGACACGTTTTTCAAAGAAATTGGTTTTGCCTTGTAA 1011
Query 33063 TGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAA 33122
||| || |||||| || ||||| ||||| | | | ||| ||||| ||||
Sbjct 1012 TGAAATCAGTTCCATAAAGTCAAAGGGATTTTGAGCGTGATACATTTTGGGCTCACCCAG 1071
Query 33123 T-TCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCA 33181
| |||| | || | || || || || || || || |||||||| ||| ||||
Sbjct 1072 TGTCAGTAG-CAGGCGGTCAGCAACAAACTCGATGTACTGTTTCATCAGGTCAGCGTTCA 1130
Query 33182 TTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCAT 33241
| || || || || || | || | || | |||||| |||||||| | ||||| |
Sbjct 1131 TACCGATCAGGCGTACAGGCAAGGCATCGGTGACAAATTCCTGTTCAATTGCAACCGCGT 1190
Query 33242 CTGTTATAATAGATCTAACGGTTTC-TTCACTCGGTGGATGCAATAAA---TGTTTAAAC 33297
| | ||||| || ||| | |||| ||| | | |||| || | ||
Sbjct 1191 CGGCAATAAT----CTCACGCAGGCGTTCAGCCGGGAGCTTATTTAAAAGCTGCTGGTAC 1246
Query 33298 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 33357
| ||| || ||||| || |||| || || || | | || ||||| || |||||
Sbjct 1247 AGCAAGCAGGCGAAGTCAGTATGCATGCCTTCATCGCGAGAGATCAGTTCATTTGAAAAA 1306
Query 33358 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAA 33417
| | || ||||| |||||||||||||||||||| || ||||| ||| ||||||
Sbjct 1307 CTCAAGCCCGGCATCAGGCCACGCTTTTTAAGCCAGAAAATGGAGCAGAAGCTACCAGAA 1366
Query 33418 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA 33477
||||| || ||||| | || |||||||| | ||| | ||| || || | || || |
Sbjct 1367 AAGAAAATGCCTTCAATGGCGGCAAAGGCGACAAGGCGCTCAGCA-AAGCTGC-CT-TTT 1423
Query 33478 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537
| ||||| ||||||| || || || | || ||||||| ||||| || ||
Sbjct 1424 TCGATCCAGCGCAGAGCCCACTCAGCTTTGCGGGTGACGCAAGGCAGGGTTTCAATCGCG 1483
Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597
|| || ||||||||| | | || || ||||||||| | || ||| ||
Sbjct 1484 CGGAACAGGCGATTTTTTTCACTTGTGTCGCGAATATAAGTATCCAGCAGTAGAGCGTAG 1543
Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 33644
|||| ||||| ||||| || || |||||||| ||||| |||||
Sbjct 1544 GTTTCAGAATGGATGTTCTCCATCATGATCTGAAAACCGTAAAAACA 1590
>seq69
Length=63067
Score = 143 bits (158), Expect = 3e-29
Identities = 379/574 (66%), Gaps = 11/574 (2%)
Strand=Plus/Minus
Query 33318 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 33377
||||| ||||| |||| |||||| || ||||| || || |||| || ||||| || ||
Sbjct 13093 GTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACC 13034
Query 33378 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGC 33437
||||| || |||||||| || || ||| || || || ||||| || ||||| || |
Sbjct 13033 GCGCTTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTTCGACCGA 12974
Query 33438 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG-TCATGTATC----CACTTTTGA 33492
||||| || | || | ||| | || || | | | || || ||||| |
Sbjct 12973 GGCAAATGCCAGCAGCCGCTCCGCGTA--CGAAGATACTTGTGGGTCGCACCACTTGAGC 12916
Query 33493 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33552
||||||| ||| |||||| ||||| || || || || || || | || | |
Sbjct 12915 GCCCAATTGGCTTTCTTTCGAACACACGGGATGGTCTCAATCGCGCGCAGAAGGTGATCC 12856
Query 33553 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33612
|| || | ||||||| || || || || | || ||| | |||||| || |||
Sbjct 12855 TTCTCCGTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAATAGACTTCCGAGTGGATG 12796
Query 33613 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 33672
|||||||| || ||||| || || || || || | ||| || | | || ||||| |
Sbjct 12795 TTTTCAATCGCGATCTGGAAGCCATAAAAGCACCGAGCTTCCGGCACTTGCACTTCATTG 12736
Query 33673 CAAAATCGTTCC--GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 33730
| ||| |||| |||| ||| || ||||| || || |||||||||||||| || || |
Sbjct 12735 CTAAA--GTTCATGGCCAGATTCTCGTTCACAATGCCATCACTGGCTGCAAAGAAGGCGA 12678
Query 33731 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTT 33790
||||| || ||||| | || | || || || ||| || |||| ||| |
Sbjct 12677 GCACATGCTTGATAAAGTGACGCTCATTGTCCGTGAGGTTCGCCCAGTCCTTGAGATCGT 12618
Query 33791 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCC 33850
| |||| || || | ||||| || || || || ||||| || ||||| | ||
Sbjct 12617 GCACCAAGTCTAGCTCCTCAGCAGTCCAGAACGAAGCTTCCGCCTTCTTGTACATCTGCC 12558
Query 33851 AGATGTCATAATATTGGATTGGGAAAATAACAAA 33884
| | ||| | | |||||| || || | |||||
Sbjct 12557 ACACGTCGTGCTCTTGGATCGGAAAGAGCACAAA 12524
>seq8027
Length=1067
Score = 98.7 bits (108), Expect = 1e-15
Identities = 289/445 (65%), Gaps = 3/445 (1%)
Strand=Plus/Minus
Query 62015 TGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAA 62074
||| | ||| || || || |||||||| || ||||| || || |||| || |||||
Sbjct 472 TGCAGATTTTGTCCGCAGGTAGTACATGCCGGTTTTGAGGCCTTTTTTCCAGCCATAAAA 413
Query 62075 ATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACT 62134
|||||| || || ||||| || || || | | ||| | ||| | || |||
Sbjct 412 ATGCATGGAGGTCAGCTTGGAGTAGCTGGGGCTTTCCATAAACAGATTTAAGGACTGAGA 353
Query 62135 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTC 62194
||| ||| ||||| || | ||| || ||||| | || | | || |||||
Sbjct 352 CTGACAGATAAAGGCGCCACGGTCAGCTGCCATATCGATCAGGGCACGCTGCTTGATTTC 293
Query 62195 CCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTC---TGAATGGA 62251
||| | ||||| || | | ||| || | ||| |||| | | | || ||||| ||
Sbjct 292 CCAGACGGTTTTGTAGATTTCCTTGATGTTTTCAGGAATCTCAGGAATCGCCTGAATTGA 233
Query 62252 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62311
|||| | || ||||| |||| |||| | |||||||||| | ||| |||
Sbjct 232 TCCATTGGCAGCAATAATTTTATTTTTGAGCACATCATTCCACAGACCCAGCTCAACTAA 173
Query 62312 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 62371
| | || ||||| ||||| || ||| || || ||||| || | || || ||
Sbjct 172 GTCGCGCAGCAGATGTTTGTTAACAACAATAAACTCACCGGACAAGACGCGGCGGGTATA 113
Query 62372 AATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62431
| ||| ||||| || || | |||| ||||| || | ||| |||| ||||| ||
Sbjct 112 GAGGTTAGATGTATAGGGCTCAAAACACTCGTTATTGCCGAGAATCTGAGAGGTTGAAGC 53
Query 62432 AGTCGGCATAGGTGCCACCAATAAA 62456
||||||||| || || || ||||||
Sbjct 52 AGTCGGCATGGGCGCAACTAATAAA 28
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622874914764280
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