Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq179 154 2e-32 seq5172 150 2e-31 seq69 143 3e-29 seq8027 98.7 1e-15 >seq179 Length=46302 Score = 154 bits (170), Expect = 2e-32 Identities = 761/1204 (63%), Gaps = 8/1204 (1%) Strand=Plus/Plus Query 62632 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 62691 |||| || || || |||||||| |||||||| || || | |||| | ||| ||||| | Sbjct 21178 CGTAGTAGATCGTCTCGAAGATGTTCTTATTCAGCTCCCGCGCTTGCTCGCTTTCAAACG 21237 Query 62692 GATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62751 || || | |||||||||||| ||||| | || || |||||||| |||| || | | Sbjct 21238 CGTAGTTCATGAGAATAAACGCATCCGCGAGACCCTGGACACCAATGCCGACTGGACGGT 21297 Query 62752 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 62811 | | | | || || | |||||||| || || || ||||| | || || | || | Sbjct 21298 GGCGCATGTTGGACGTGCGAGCTTCTGCAACGGGGTAGTAATTCACCTCAATCACCTTGT 21357 Query 62812 TGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT 62871 | || || | | || || ||| || | ||| || ||| ||| || | Sbjct 21358 TCAGGTTACGCGTCACGACGCTGGTCACGTCGTACAGCTTCTTGTAATTAAACACGCCGT 21417 Query 62872 CTATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 62931 || |||||| || || || || || |||| |||||| || || || |||| | Sbjct 21418 CTTCAACAAACTTGGGCAGCGCTACCGACGCCAAATTACACACCGCCACTTCATCCGGCG 21477 Query 62932 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTT 62991 || | | || | ||| ||| | ||||| || ||| || || | || || | Sbjct 21478 ACGTGAACTCCATCACTTCACAGCACAAGTTACTGGACCGGATCGTGCCAAGGTTCTGCT 21537 Query 62992 GATTACTCTTTTTGTTACAC-GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 63050 | || | ||| | | ||| ||||||||||| || || || || || ||||||||| Sbjct 21538 GGTT-CGATTTGCGGTTCACTGCATCCTTATAGAGCATAAAGGGCACTCCCGTTTCAATC 21596 Query 63051 TGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCCT 63109 || | || | ||||| ||| | | || | || || || | || | | | | Sbjct 21597 TGCGCATCCAAGATCGCAAACCACAGCTGCTGG-GCATTGATCGTC--TTCCTCGCCCGT 21653 Query 63110 TTCTCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAAT 63167 ||||| ||||| | |||||| || |||||||| ||||| | || || Sbjct 21654 CCCTCTTGTTCGTACTTTTCATACAAAGTCTCAAACTCGTCGCCCCAGTACTCGTACAGC 21713 Query 63168 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63227 || ||| ||||| ||||| | ||| ||||| || | | | ||| |||||||| Sbjct 21714 CCTGGAGCTTCATTTGGACAGAACAAACTCCACTTACCATTTGCTTCCACCCGTTTCATG 21773 Query 63228 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 || ||||| || | ||| | || | || | || | | | ||| || || || Sbjct 21774 AATAGATCGGGTACCCACAACGCAAAGAACAAGTCCCGCGCCCGATGGAGTTCATTGCCA 21833 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 ||| || | |||||| ||| | | | || | ||||||||||||||||| || Sbjct 21834 TGATTTTTCCGCAAATCGAGAAACTCAAACACGTCTGCGTGCCACGGTTCCAAGTAGATC 21893 Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407 || | ||| |||||| || || ||||| | ||||| || |||| |||| | Sbjct 21894 GCAAACGATCCTTTGCGTTTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCATTAAAC 21953 Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467 || | | ||| || ||||| ||||| || ||||| || || ||| ||||| Sbjct 21954 ACGCGAAGCATGGGGATAATCCCGTTCGAAGAGCCATTAGTGCCTCGGATGTAGCTATTC 22013 Query 63468 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63527 |||| || ||||| || | || || || |||||| ||| || || | || Sbjct 22014 GTGGCCCGGATATTGTGCATACTAATGCCAATCCCTCCTGCCCATTTCGAAATGCACGCA 22073 Query 63528 CATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63587 ||| |||| || || |||||||| || || ||| |||||| |||| | || ||| Sbjct 22074 CATTGTTTCAAGGTATCATAGATTCCTTCAATGGAATCATCTTTCATAGCCAATAAAAAG 22133 Query 63588 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63647 || ||||| |||| | ||| || || |||||||| | || || | || || ||| Sbjct 22134 CACGAAGACAATTGGGGGCGAGGGGTACCGGCATTAAACAGCGTCGGGGTCGCATGGGTA 22193 Query 63648 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGA 63707 || | || | || | || | || || || | || | | || ||| || ||| Sbjct 22194 AAAAACTTCTGCGACATTAATTCATATGTTTCCAACGCAGCGATAATGTCCTGTTTATGG 22253 Query 63708 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 63767 || || | ||||| || | | ||| || || || | ||| |||| || ||| | Sbjct 22254 ATGCCAATCGCGACTCGTAAAATCATCTGTTGCGGCCGTTCGACGACTTTACCGTTGACC 22313 Query 63768 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 63827 ||||| || | ||| | |||||||| |||||||||| ||| || || || Sbjct 22314 CGAAACAAATAACCTCGTTCGAGGGTTTTAAACCCAAAATAGTCATATTCGAAATCCCGG 22373 Query 63828 TCGT 63831 |||| Sbjct 22374 TCGT 22377 >seq5172 Length=1594 Score = 150 bits (166), Expect = 2e-31 Identities = 427/647 (66%), Gaps = 13/647 (2%) Strand=Plus/Plus Query 33003 AACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAA 33062 ||| ||| |||||| || ||| ||||||||||| || ||||| ||||| |||| || Sbjct 952 AACACCCGCTTTTTGATACTCAGAGACACGTTTTTCAAAGAAATTGGTTTTGCCTTGTAA 1011 Query 33063 TGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAA 33122 ||| || |||||| || ||||| ||||| | | | ||| ||||| |||| Sbjct 1012 TGAAATCAGTTCCATAAAGTCAAAGGGATTTTGAGCGTGATACATTTTGGGCTCACCCAG 1071 Query 33123 T-TCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCA 33181 | |||| | || | || || || || || || || |||||||| ||| |||| Sbjct 1072 TGTCAGTAG-CAGGCGGTCAGCAACAAACTCGATGTACTGTTTCATCAGGTCAGCGTTCA 1130 Query 33182 TTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCAT 33241 | || || || || || | || | || | |||||| |||||||| | ||||| | Sbjct 1131 TACCGATCAGGCGTACAGGCAAGGCATCGGTGACAAATTCCTGTTCAATTGCAACCGCGT 1190 Query 33242 CTGTTATAATAGATCTAACGGTTTC-TTCACTCGGTGGATGCAATAAA---TGTTTAAAC 33297 | | ||||| || ||| | |||| ||| | | |||| || | || Sbjct 1191 CGGCAATAAT----CTCACGCAGGCGTTCAGCCGGGAGCTTATTTAAAAGCTGCTGGTAC 1246 Query 33298 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 33357 | ||| || ||||| || |||| || || || | | || ||||| || ||||| Sbjct 1247 AGCAAGCAGGCGAAGTCAGTATGCATGCCTTCATCGCGAGAGATCAGTTCATTTGAAAAA 1306 Query 33358 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAA 33417 | | || ||||| |||||||||||||||||||| || ||||| ||| |||||| Sbjct 1307 CTCAAGCCCGGCATCAGGCCACGCTTTTTAAGCCAGAAAATGGAGCAGAAGCTACCAGAA 1366 Query 33418 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA 33477 ||||| || ||||| | || |||||||| | ||| | ||| || || | || || | Sbjct 1367 AAGAAAATGCCTTCAATGGCGGCAAAGGCGACAAGGCGCTCAGCA-AAGCTGC-CT-TTT 1423 Query 33478 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33537 | ||||| ||||||| || || || | || ||||||| ||||| || || Sbjct 1424 TCGATCCAGCGCAGAGCCCACTCAGCTTTGCGGGTGACGCAAGGCAGGGTTTCAATCGCG 1483 Query 33538 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33597 || || ||||||||| | | || || ||||||||| | || ||| || Sbjct 1484 CGGAACAGGCGATTTTTTTCACTTGTGTCGCGAATATAAGTATCCAGCAGTAGAGCGTAG 1543 Query 33598 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 33644 |||| ||||| ||||| || || |||||||| ||||| ||||| Sbjct 1544 GTTTCAGAATGGATGTTCTCCATCATGATCTGAAAACCGTAAAAACA 1590 >seq69 Length=63067 Score = 143 bits (158), Expect = 3e-29 Identities = 379/574 (66%), Gaps = 11/574 (2%) Strand=Plus/Minus Query 33318 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 33377 ||||| ||||| |||| |||||| || ||||| || || |||| || ||||| || || Sbjct 13093 GTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACC 13034 Query 33378 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGC 33437 ||||| || |||||||| || || ||| || || || ||||| || ||||| || | Sbjct 13033 GCGCTTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTTCGACCGA 12974 Query 33438 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG-TCATGTATC----CACTTTTGA 33492 ||||| || | || | ||| | || || | | | || || ||||| | Sbjct 12973 GGCAAATGCCAGCAGCCGCTCCGCGTA--CGAAGATACTTGTGGGTCGCACCACTTGAGC 12916 Query 33493 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33552 ||||||| ||| |||||| ||||| || || || || || || | || | | Sbjct 12915 GCCCAATTGGCTTTCTTTCGAACACACGGGATGGTCTCAATCGCGCGCAGAAGGTGATCC 12856 Query 33553 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33612 || || | ||||||| || || || || | || ||| | |||||| || ||| Sbjct 12855 TTCTCCGTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAATAGACTTCCGAGTGGATG 12796 Query 33613 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 33672 |||||||| || ||||| || || || || || | ||| || | | || ||||| | Sbjct 12795 TTTTCAATCGCGATCTGGAAGCCATAAAAGCACCGAGCTTCCGGCACTTGCACTTCATTG 12736 Query 33673 CAAAATCGTTCC--GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 33730 | ||| |||| |||| ||| || ||||| || || |||||||||||||| || || | Sbjct 12735 CTAAA--GTTCATGGCCAGATTCTCGTTCACAATGCCATCACTGGCTGCAAAGAAGGCGA 12678 Query 33731 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTT 33790 ||||| || ||||| | || | || || || ||| || |||| ||| | Sbjct 12677 GCACATGCTTGATAAAGTGACGCTCATTGTCCGTGAGGTTCGCCCAGTCCTTGAGATCGT 12618 Query 33791 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCC 33850 | |||| || || | ||||| || || || || ||||| || ||||| | || Sbjct 12617 GCACCAAGTCTAGCTCCTCAGCAGTCCAGAACGAAGCTTCCGCCTTCTTGTACATCTGCC 12558 Query 33851 AGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 | | ||| | | |||||| || || | ||||| Sbjct 12557 ACACGTCGTGCTCTTGGATCGGAAAGAGCACAAA 12524 >seq8027 Length=1067 Score = 98.7 bits (108), Expect = 1e-15 Identities = 289/445 (65%), Gaps = 3/445 (1%) Strand=Plus/Minus Query 62015 TGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAA 62074 ||| | ||| || || || |||||||| || ||||| || || |||| || ||||| Sbjct 472 TGCAGATTTTGTCCGCAGGTAGTACATGCCGGTTTTGAGGCCTTTTTTCCAGCCATAAAA 413 Query 62075 ATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACT 62134 |||||| || || ||||| || || || | | ||| | ||| | || ||| Sbjct 412 ATGCATGGAGGTCAGCTTGGAGTAGCTGGGGCTTTCCATAAACAGATTTAAGGACTGAGA 353 Query 62135 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTC 62194 ||| ||| ||||| || | ||| || ||||| | || | | || ||||| Sbjct 352 CTGACAGATAAAGGCGCCACGGTCAGCTGCCATATCGATCAGGGCACGCTGCTTGATTTC 293 Query 62195 CCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTC---TGAATGGA 62251 ||| | ||||| || | | ||| || | ||| |||| | | | || ||||| || Sbjct 292 CCAGACGGTTTTGTAGATTTCCTTGATGTTTTCAGGAATCTCAGGAATCGCCTGAATTGA 233 Query 62252 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62311 |||| | || ||||| |||| |||| | |||||||||| | ||| ||| Sbjct 232 TCCATTGGCAGCAATAATTTTATTTTTGAGCACATCATTCCACAGACCCAGCTCAACTAA 173 Query 62312 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 62371 | | || ||||| ||||| || ||| || || ||||| || | || || || Sbjct 172 GTCGCGCAGCAGATGTTTGTTAACAACAATAAACTCACCGGACAAGACGCGGCGGGTATA 113 Query 62372 AATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62431 | ||| ||||| || || | |||| ||||| || | ||| |||| ||||| || Sbjct 112 GAGGTTAGATGTATAGGGCTCAAAACACTCGTTATTGCCGAGAATCTGAGAGGTTGAAGC 53 Query 62432 AGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||| || || || |||||| Sbjct 52 AGTCGGCATGGGCGCAACTAATAAA 28 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622874914764280