Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_007023.1 Length=180500 Score E Sequences producing significant alignments: (Bits) Value seq2003 223 4e-53 seq3915 102 9e-17 >seq2003 Length=7520 Score = 223 bits (246), Expect = 4e-53 Identities = 324/458 (71%), Gaps = 0/458 (0%) Strand=Plus/Plus Query 41788 AAGCTGTCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCC 41847 ||| | ||| | ||||||||||| ||||| |||||||||||||||||||| ||||| | Sbjct 6674 AAGATCTCGCTGCCTACGCCTATCATGGCCGGTGTGCGTACTCCTACGCGCCAGTTCAGC 6733 Query 41848 AGTTGCGTAGTGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCTGCG 41907 |||||| |||| || | | ||| |||| | ||||| ||| ||| Sbjct 6734 TCCTGCGTACTGATCGAGTGTGATGACAGCCTGGACAGCATCAATGCAACCACCAGCGCG 6793 Query 41908 ATCGTGAAGTATATTTCACAACGCGCGGGTATCGGTGTTAATGCTGGACACATTCGCGCA 41967 |||||||||||| | || |||||||| || || || || || || || | ||| ||||| Sbjct 6794 ATCGTGAAGTATGTCTCGCAACGCGCCGGCATAGGCGTCAACGCGGGCCGCATCCGCGCG 6853 Query 41968 ATGGGTTCTAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTGGAAA 42027 |||| | || ||||| || ||||| |||||| || | ||||||| ||| Sbjct 6854 CTGGGCAGCGAGATACGTGGCGGCGAAGCGCAACATACCGGTTGCCTGCCGTTCTACAAA 6913 Query 42028 CATATTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACG 42087 | | ||| | ||||| |||||||| || || || || || || ||||| || || ||| Sbjct 6914 CTGTTCCAGTCTGCGGTGAAATCCTGCTCGCAGGGCGGTGTGCGGGGTGGGGCGGCGACG 6973 Query 42088 TTGTATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAA 42147 |||| || ||| | ||||| | ||||| ||| |||||||| |||||||||||| Sbjct 6974 TTGTTCTACCCGTTGTGGCACCTTGAAGTCGAATCACTGCTGGTGCTGAAAAACAACCGC 7033 Query 42148 GGTGTTGAGAATAACCGTATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTTGATG 42207 || || || | |||||| | ||||| || ||||||||||| ||| | ||| ||||| Sbjct 7034 GGCGTAGAAGAAAACCGTGTGCGTCATCTCGATTATGGCGTGCAGATCAACCGCCTGATG 7093 Query 42208 TATAAGCGTTTAATCAATAACGATTACATCACACTGTT 42245 || |||| | ||||| | | ||||||| ||||| Sbjct 7094 TACCAGCGCCTGATCAAGGGCCAGAACATCACTCTGTT 7131 >seq3915 Length=2367 Score = 102 bits (112), Expect = 9e-17 Identities = 188/270 (70%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 43546 GTTGCCCGATATGAAGAACAAAAACATCGCGTATTCGAAACTTTGACTGAAAAACAACTG 43605 || || || ||||| |||| ||| ||| || ||||| | ||| || |||||||| Sbjct 1014 GTGGCGCGGTATGACCAACAGAAATATCCGGTGTTCGAGAAGCTGATCGAGAAACAACTC 955 Query 43606 TCATTCTTCTGGCGACCGGAAGAAGTGGATCTGTCGATCGACCGTATGCAGTATGCAAAA 43665 || ||||||||||| || |||||||| ||| ||||| ||||| | ||| | Sbjct 954 TCCTTCTTCTGGCGTCCAGAAGAAGTCGATGTGTCGCAAGACCGCGCTGACTATCAAGGC 895 Query 43666 ATGCCGGAACACGAGAAAATCAT-TTTTGAT-TCTAACCTGCAATATCAAACCCTGTTAG 43723 |||| || || ||||| ||| |||| || |||||| | ||||| || ||| | | Sbjct 894 CTGCCCGAGCA--TGAAAAGCATATTTTCATCAGCAACCTGAAGTATCAGACGCTGCTGG 837 Query 43724 ATACCATTCAGGGACGTGGCCCTAACCTGGCGTTTCTCCCGATTGCCTCTGATGTTTCAA 43783 || |||| ||||| ||| |||||||| |||| || | ||| | | | | || | | Sbjct 836 ATTCCATCCAGGGCCGTAGCCCTAACGTGGCCTTGTTGCCGCTGG--TGTCATTGCCCGA 779 Query 43784 --TGGAAACGTGGATCGAAACATGGGCTTT 43811 ||||||| |||||||| || ||||| || Sbjct 778 GCTGGAAACCTGGATCGAGACCTGGGCGTT 749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577404991592800