Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_007023.1
Length=180500
Score E
Sequences producing significant alignments: (Bits) Value
seq2003 223 4e-53
seq3915 102 9e-17
>seq2003
Length=7520
Score = 223 bits (246), Expect = 4e-53
Identities = 324/458 (71%), Gaps = 0/458 (0%)
Strand=Plus/Plus
Query 41788 AAGCTGTCGTTACCTACGCCTATTATGGCTGGTGTGCGTACTCCTACGCGTCAGTTTTCC 41847
||| | ||| | ||||||||||| ||||| |||||||||||||||||||| ||||| |
Sbjct 6674 AAGATCTCGCTGCCTACGCCTATCATGGCCGGTGTGCGTACTCCTACGCGCCAGTTCAGC 6733
Query 41848 AGTTGCGTAGTGATTGAATCAGGTGATTCACTGGGTTCTCTGAATGCTGTAACCTCTGCG 41907
|||||| |||| || | | ||| |||| | ||||| ||| |||
Sbjct 6734 TCCTGCGTACTGATCGAGTGTGATGACAGCCTGGACAGCATCAATGCAACCACCAGCGCG 6793
Query 41908 ATCGTGAAGTATATTTCACAACGCGCGGGTATCGGTGTTAATGCTGGACACATTCGCGCA 41967
|||||||||||| | || |||||||| || || || || || || || | ||| |||||
Sbjct 6794 ATCGTGAAGTATGTCTCGCAACGCGCCGGCATAGGCGTCAACGCGGGCCGCATCCGCGCG 6853
Query 41968 ATGGGTTCTAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTGGAAA 42027
|||| | || ||||| || ||||| |||||| || | ||||||| |||
Sbjct 6854 CTGGGCAGCGAGATACGTGGCGGCGAAGCGCAACATACCGGTTGCCTGCCGTTCTACAAA 6913
Query 42028 CATATTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCAACG 42087
| | ||| | ||||| |||||||| || || || || || || ||||| || || |||
Sbjct 6914 CTGTTCCAGTCTGCGGTGAAATCCTGCTCGCAGGGCGGTGTGCGGGGTGGGGCGGCGACG 6973
Query 42088 TTGTATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAACAAA 42147
|||| || ||| | ||||| | ||||| ||| |||||||| ||||||||||||
Sbjct 6974 TTGTTCTACCCGTTGTGGCACCTTGAAGTCGAATCACTGCTGGTGCTGAAAAACAACCGC 7033
Query 42148 GGTGTTGAGAATAACCGTATTCGTCACCTGGATTATGGCGTTCAGCTTAACGATTTGATG 42207
|| || || | |||||| | ||||| || ||||||||||| ||| | ||| |||||
Sbjct 7034 GGCGTAGAAGAAAACCGTGTGCGTCATCTCGATTATGGCGTGCAGATCAACCGCCTGATG 7093
Query 42208 TATAAGCGTTTAATCAATAACGATTACATCACACTGTT 42245
|| |||| | ||||| | | ||||||| |||||
Sbjct 7094 TACCAGCGCCTGATCAAGGGCCAGAACATCACTCTGTT 7131
>seq3915
Length=2367
Score = 102 bits (112), Expect = 9e-17
Identities = 188/270 (70%), Gaps = 8/270 (3%)
Strand=Plus/Minus
Query 43546 GTTGCCCGATATGAAGAACAAAAACATCGCGTATTCGAAACTTTGACTGAAAAACAACTG 43605
|| || || ||||| |||| ||| ||| || ||||| | ||| || ||||||||
Sbjct 1014 GTGGCGCGGTATGACCAACAGAAATATCCGGTGTTCGAGAAGCTGATCGAGAAACAACTC 955
Query 43606 TCATTCTTCTGGCGACCGGAAGAAGTGGATCTGTCGATCGACCGTATGCAGTATGCAAAA 43665
|| ||||||||||| || |||||||| ||| ||||| ||||| | ||| |
Sbjct 954 TCCTTCTTCTGGCGTCCAGAAGAAGTCGATGTGTCGCAAGACCGCGCTGACTATCAAGGC 895
Query 43666 ATGCCGGAACACGAGAAAATCAT-TTTTGAT-TCTAACCTGCAATATCAAACCCTGTTAG 43723
|||| || || ||||| ||| |||| || |||||| | ||||| || ||| | |
Sbjct 894 CTGCCCGAGCA--TGAAAAGCATATTTTCATCAGCAACCTGAAGTATCAGACGCTGCTGG 837
Query 43724 ATACCATTCAGGGACGTGGCCCTAACCTGGCGTTTCTCCCGATTGCCTCTGATGTTTCAA 43783
|| |||| ||||| ||| |||||||| |||| || | ||| | | | | || | |
Sbjct 836 ATTCCATCCAGGGCCGTAGCCCTAACGTGGCCTTGTTGCCGCTGG--TGTCATTGCCCGA 779
Query 43784 --TGGAAACGTGGATCGAAACATGGGCTTT 43811
||||||| |||||||| || ||||| ||
Sbjct 778 GCTGGAAACCTGGATCGAGACCTGGGCGTT 749
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577404991592800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |