Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq179 277 5e-69 seq5172 150 5e-31 seq8027 122 2e-22 seq69 114 3e-20 >seq179 Length=46302 Score = 277 bits (306), Expect = 5e-69 Identities = 995/1531 (65%), Gaps = 35/1531 (2%) Strand=Plus/Minus Query 363372 GGATCTCGAGTATGA-TATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTA 363430 |||| |||| ||||| |||||| || | ||| || | || | || | | ||| Sbjct 22370 GGATTTCGAATATGACTATTTTGGGTT-TAAAACCCTCGAACGAGGTTATTTGTTTCGGG 22312 Query 363431 TCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCC 363490 |||| ||| | | || ||||| ||||| || ||| | | || || || ||||| |||| Sbjct 22311 TCAACGGTAAAGTCGTCGAACGGCCGCAACAGATGATTTTACGAGTCGCGATTGGCATCC 22252 Query 363491 ATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGT-GCTCGTGTATTC 363549 || | ||| || || ||| | ||||||||| | | | || || || || Sbjct 22251 ATAAACAGGACATTATCGCTGCGTTGGAAACATATGAATTAAT--GTCGCAGAAGTTTTT 22194 Query 363550 -ACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTG 363608 || || || || || || ||| ||||| || || | | || || ||||||| || Sbjct 22193 TACCCATGCGACCCCGACGCTGTTTAATGCCGGTACCCCTCGCCCCCAATTGTCTTCGTG 22134 Query 363609 CTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTG 363668 |||| | | ||||| || |||||||| || || |||| ||| || | || | || Sbjct 22133 CTTTTTATTGGCTATGAAAGATGATTCCATTGAAGGAATCTATGATACCTTGAAACAATG 22074 Query 363669 TGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACA 363728 ||| ||||| || ||||| || ||||| | || |||||| | || || Sbjct 22073 TGCGTGCATTTCGAAATGGGCAGGAGGGATTGGCATTAGTATGCACAATATCCGGGCCAC 22014 Query 363729 GAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGT 363788 ||| || ||||| || ||||| || | ||||| ||| | | ||||||||||| || Sbjct 22013 GAATAGCTACATCCGAGGCACTAATGGCTCTTCGAACGGGATTATCCCCATGCTTCGCGT 21954 Query 363789 GTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGC 363848 |||| | | || || | ||||| || || ||||| || || |||||||| ||||||| Sbjct 21953 GTTTAATGACACGGCACGATACGTGGATCAAGGTGGCGGCAAACGCAAAGGATCGTTTGC 21894 Query 363849 TATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA-CA 363907 || || | || || || || || | ||||||||||| || | |||||||| || Sbjct 21893 GATCTACTTGGAACCGTGGCACGCAGACGTGTTTGAGTTTCTCGATTTGCGGAAAAATCA 21834 Query 363908 CGGGAAAAGAGGAATT---GCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACC 363964 || | | ||| | || || || || |||||| ||| | ||||| | || | Sbjct 21833 TGGCA----ATGAACTCCATCGGGCGCGGGACTTGTTCTTTGCGTTGTGGGTACCCGATC 21778 Query 363965 ATTTTATGAAGCGCGTGGAGGCA---GGTAAGAATTGGTCACTCTTTTGCCCACACGAAT 364021 || ||||| || ||||| ||| |||||| ||| | || || ||| | ||| Sbjct 21777 TATTCATGAAACGGGTGGAAGCAAATGGTAAG---TGGAGTTTGTTCTGTCCAAATGAAG 21721 Query 364022 GTCCAGGTCTTTCCGATGTA-TGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAA 364080 |||||| || | ||| ||| ||||| ||||| | || || | || |||||||| ||| Sbjct 21720 CTCCAGGGCTGTACGA-GTACTGGGGCGACGAGTTTGAGACTTTGTATGAAAAGTACGAA 21662 Query 364081 TCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGAT 364140 |||||| ||| | ||||| || || ||| |||| |||||||| ||| ||||| Sbjct 21661 CAAGAGGGACGGGCGAGGAAGACGATCAATGCCCAGCAGCTGTGGTTTGCGATCTTGGAT 21602 Query 364141 TCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTC-GTGCAACCGCAAGTC 364199 |||||||||| || ||| |||| |||| | || || ||| | ||| |||||||| || Sbjct 21601 GCGCAGATTGAAACGGGAGTGCCCTTTATGCTCTATAAGGATGCAGTG-AACCGCAAATC 21543 Query 364200 CAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATA 364259 ||||||||| ||||||| || || | | || ||| | || || | || || | Sbjct 21542 GAACCAGCAGAACCTTGGCACGATCCGGTCCAGTAACTTGTGCTGTGAAGTGATGGAGTT 21483 Query 364260 CACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT 364319 ||| | || || || || || ||||| | |||||| | ||||| || |||||| Sbjct 21482 CACGTCGCCGGATGAAGTGGCGGTGTGTAATTTGGCGTCGGTAGCGCTGCCCAAGTTTGT 21423 Query 364320 AAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCAT-GCTACTTGCA 364378 |||| || ||| | || || | || || ||||| ||| | | | | || | | Sbjct 21422 TGAAGACGGCGTGTTTAATTACAAGAAGCTGTACGACGTGACC-AGCGTCGTGACGCGTA 21364 Query 364379 ATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC-CGAGCGTTCTAAT 364437 | || ||||||| || || |||||| || || || | ||||| || || || || Sbjct 21363 ACCTGAACAAGGTGATTGAGGTGAATTACTACCCCGTTGCAGAAGCTCGCACG-TCCAAC 21305 Query 364438 ATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTC 364497 ||||| || || || | || ||||||| ||||| ||||| || | ||||| | | Sbjct 21304 ATGCGCCACCGTCCAGTCGGCATTGGTGTCCAGGGTCTCGCGGATGCGTTTATTCTCATG 21245 Query 364498 AAGATGGCATTTGATTCGCCTG-ACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAAT 364556 || || ||||| || | | || || | || |||||| | ||||| || || || Sbjct 21244 AACTACGCGTTTGA-AAGCGAGCAAGCGCGGGAGCTGAATAAGAACATCTTCGAGACGAT 21186 Query 364557 GTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTAC 364616 || | || | |||| | ||| || | || || ||| |||| || Sbjct 21185 CTACTACGCTTCGATGAAGACGTCGATGGAGATTGCCAAGGAATTGGGTCCGTACGAGAC 21126 Query 364617 TTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCC 364676 | |||| || || |||| | |||||||| || | ||| |||||||| Sbjct 21125 GTTCCAGGGCTCTCCAGCGAGCAAGGGGATCTTCCAGTTCGACATGTGGGGCGTCACGCC 21066 Query 364677 ATCTGTC----CGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTC 364732 || ||| | ||| ||||| | | ||||| | ||| |||| | || Sbjct 21065 GTC-GTCAGGTCTTTGGGACTGGACGGAGTTGAAGGAGAACGTGATCAAGTATGGCATTC 21007 Query 364733 GCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACA 364792 ||||||| || | ||||| ||||| |||||||| || || ||||| || || |||| Sbjct 21006 GCAACTCTCTGCTCGTGGCGCCAATGCCGACGGCTTCGACGGCCCAGATTCTGGGCAACA 20947 Query 364793 ACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAAT 364852 |||||| | || |||| || ||| | || ||||| || || | || || | Sbjct 20946 ACGAGTCGATTGAGCCGTACACGTCGAATATGTACAACCGCCGCGTGCTGGCTGGCGAGT 20887 Query 364853 TTCCGGTAGTTAATAAGTACCTAGTCAAGGA 364883 || || | || || |||||||| | ||||| Sbjct 20886 TTACGATTGTAAACAAGTACCTGATGAAGGA 20856 >seq5172 Length=1594 Score = 150 bits (166), Expect = 5e-31 Identities = 317/467 (68%), Gaps = 7/467 (1%) Strand=Plus/Minus Query 22483 TTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG-AGCATT 22541 || || || || ||| | || ||||| | |||||||||||||||||||||| ||| || Sbjct 1413 TTTGCTGAGCGCCTTGTCGCCTTTGCCGCCATTGAAGGCATTTTCTTTTCTGGTAGC-TT 1355 Query 22542 TTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGA 22601 || | || || ||||| ||||| |||| | |||||||| | | ||||||||||| Sbjct 1354 CTGCTCCATTTTCTGGCTTAAAAAGCGTGGCCTGATGCCGGGCTTGAGTTTTTCAAATGA 1295 Query 22602 GTTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCA 22661 | || || ||||| || | ||||| || || || || |||| || | | | | Sbjct 1294 ACTGATCTCTCGCGATGAAGGCATGCATACTGACTTCGCCTGCTTGCTGTACCAGCAGCT 1235 Query 22662 TATCATTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACT 22721 | | | |||| || || |||| | | ||| |||||| | | || |||| | | Sbjct 1234 TTTAA---ATAAGCTCCCGGCTGAACGCCTGCGTGAGATTATTGCCGACGCGGTTGCAAT 1178 Query 22722 TGAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATC 22781 ||||| |||| | ||| || || || ||| | || || ||||| || || || Sbjct 1177 TGAACAGGAATTTGTCACCGATGCCTTGCCTGTACGCCTGATCGGTATGAACGCTGACCT 1118 Query 22782 AATGAGTACA-TATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAA 22840 |||| ||| || || | |||||||| || || || || | |||| ||| | | | Sbjct 1117 GATGAA-ACAGTACATCGAGTTTGTTGCTGACCGCCTGCTACTGACACTGGGTGAGCCCA 1059 Query 22841 AGCATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGA 22900 | ||| ||| ||||| ||||| | |||||||| |||||| | |||| || | Sbjct 1058 AAATGTATCACGCTCAAAATCCCTTTGACTTTATGGAACTGATTTCATTACAAGGCAAAA 999 Query 22901 CCAATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTT 22947 |||||||||| |||||| | || ||| || |||||||| |||||| Sbjct 998 CCAATTTCTTTGAAAAACGTGTCTCTGAGTATCAAAAAGCGGGTGTT 952 Score = 84.2 bits (92), Expect = 6e-11 Identities = 154/225 (68%), Gaps = 8/225 (4%) Strand=Plus/Minus Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 |||||||| ||||| ||||||||| | |||||||| || | || |||||| || || Sbjct 251 ATTGTTGAGCGCCCCCAGCATATGCTGATGCGTGTAGCGGTCGGCATCCATCGCGATAAT 192 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCT----TCTAAGTGCTCGTGTATTCACGCACGC 363557 || ||| | ||| ||||| || | || ||| || ||| || || |||||| Sbjct 191 ATTCCTGCGGTGATCGAAACCTACGAACTGCTCTCTGAGCGCTGGTTTACTCACGC---- 136 Query 363558 CACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCT 363617 ||| || || | | ||||| ||| | || || ||||||||||| ||||| | | Sbjct 135 CACCCCGACCTTATTTAATGCATCAACCCCCAAACCCCAGATGTCTTCCTGCTTCTTAGT 76 Query 363618 AAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAA 363662 ||||| ||||| |||||| || |||| ||||| || || Sbjct 75 CGGCATGAAAGACGACAGCATCGACGGCATCTACGACACGCTCAA 31 >seq8027 Length=1067 Score = 122 bits (134), Expect = 2e-22 Identities = 261/390 (67%), Gaps = 0/390 (0%) Strand=Plus/Plus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 ||||||||||| || ||||| || | ||||| ||||| || |||||||| || || || Sbjct 38 GCGCCCATGCCGACTGCTTCAACCTCTCAGATTCTCGGCAATAACGAGTGTTTTGAGCCC 97 Query 364810 TTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAG 364869 | |||| || || ||| | ||||| || | ||||| || ||| || ||||| || Sbjct 98 TATACATCTAACCTCTATACCCGCCGCGTCTTGTCCGGTGAGTTTATTGTTGTTAACAAA 157 Query 364870 TACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATC 364929 | || | || | || | || |||||| ||| | || || | || Sbjct 158 CATCTGCTGCGCGACTTAGTTGAGCTGGGTCTGTGGAATGATGTGCTCAAAAATAAAATT 217 Query 364930 ATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATT 364989 || || || ||||| || | ||| ||||| | |||| ||| | | ||| || Sbjct 218 ATTGCTGCCAATGGATCAATTCAGGCGATTCCTGAGATTCCTGAAAACATCAAGGAAATC 277 Query 364990 TACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGT 365049 ||||||||||| |||||||| ||| | || || |||||||| || || || || Sbjct 278 TACAAAACCGTCTGGGAAATCAAGCAGCGTGCCCTGATCGATATGGCAGCTGACCGTGGC 337 Query 365050 GCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAG 365109 || |||||||||||| ||||| || || | || ||| || | || | ||||| Sbjct 338 GCCTTTATCTGTCAGTCTCAGTCCTTAAATCTGTTTATGGAAAGCCCCAGCTACTCCAAG 397 Query 365110 CTTACATCCATGCATTTCTACGGGTGGAAA 365139 || || ||||||||||| || || |||||| Sbjct 398 CTGACCTCCATGCATTTTTATGGCTGGAAA 427 >seq69 Length=63067 Score = 114 bits (126), Expect = 3e-20 Identities = 323/486 (66%), Gaps = 15/486 (3%) Strand=Plus/Plus Query 22167 GGATTGGCCAAAACTTACAGAAAACGAACAACATTTTATCAAATATATTCTAGCATTCTT 22226 ||| ||| | || || || || || || | || |||||||| || | || || ||||| Sbjct 12628 GGACTGGGCGAACCTCACGGACAATGAGCGTCACTTTATCAAGCATGTGCTCGCCTTCTT 12687 Query 22227 TGCTACCGCAGACGGTATAGTTTTTGAGAATCTAGTGACTAATTTT-GCATCTGAAATTC 22285 ||| || || || || || |||||||| | | || ||| ||| |||| | | Sbjct 12688 TGCAGCCAGTGATGGCATTGTGAACGAGAATCTGGCCATGAACTTTAGCAA-TGAAGTGC 12746 Query 22286 AATACCCAGAGGCCAGATGTTTCTATGGTGTGCAAATGATGATTGAAAATGTTCACGCGG 22345 || || || || | || || ||||| | || || ||||||||| | ||| ||| Sbjct 12747 AAGTGCCGGAAGCTCGGTGCTTTTATGGCTTCCAGATCGCGATTGAAAACATCCACTCGG 12806 Query 22346 AAACATATTCTATGATGCTACAGTCACTCGTAGAAGATAAAGACGA---ACAACGAA-AC 22401 || ||||| | |||| || | || |||| | | | || ||| | || || || Sbjct 12807 AAGTCTATTC---GCTGCT-CATTGACACGTACATTAAAGAGGCGACGGAGAAGGATCAC 12862 Query 22402 TTATTCCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGCTGAAA 22461 | | ||||||||| ||||| | | || || || || |||||||||| || Sbjct 12863 CTTCTGCGCGCGATTGAGACCATCCCGTGTGTTCGAAAGAAAGCCAATTGGGCGCTCAAG 12922 Query 22462 TGGAT-GA---ACAATGAACGTTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGA 22517 ||| || |||| | | ||| | |||||| || || | |||||||| ||| || Sbjct 12923 TGGTGCGACCCACAAGTATC-TTCGTACGCGGAGCGGCTGCTGGCATTTGCCTCGGTCGA 12981 Query 22518 AGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTAT 22577 |||||||||||| || || | || || | ||||||||||| || || || | | || Sbjct 12982 AGGCATTTTCTTCTCGGGCTCGTTCTGCTCGATCTTTTGGCTGAAGAAGCGCGGTCTCAT 13041 Query 22578 GCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATTT 22637 ||| || || | || || || ||| | ||||| ||||||||||| | || || || || Sbjct 13042 GCCTGGCCTCAGCTTCTCGAACGAGCTCATTAGTCGAGATGAGGGCATGCACACGGACTT 13101 Query 22638 TGCGTG 22643 |||||| Sbjct 13102 TGCGTG 13107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303198581159306