Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq69 134 1e-26 seq179 118 1e-21 seq315 114 1e-20 seq8027 98.7 9e-16 seq479 93.3 4e-14 >seq69 Length=63067 Score = 134 bits (148), Expect = 1e-26 Identities = 351/521 (67%), Gaps = 21/521 (4%) Strand=Plus/Plus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAAC--AGCAGCACCG 46141 || ||||| || || |||||| || | |||||| | |||||| | || | || | | Sbjct 12884 ATCCCGTGTGTTCGAAAGAAAGCCAATTGGGCGCTCAAGTGGTGCGACCCACAAGTATCT 12943 Query 46142 CGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCA 46201 | | ||| ||||| || |||| ||||| || || ||| | || || || ||| Sbjct 12944 T--CGTACGCGGAGCGGCTGCTGGCATTTGCCTCGGTCGAAGGCATTTTCTTCTCGGGCT 13001 Query 46202 -GTTTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAG 46259 ||| ||| | ||||||| | || || | || | ||||||| ||||| | || Sbjct 13002 CGTTCTGCT-CGATCTTTTGGCTGAAGAAGCGCGGTC-TCATGCCTGGCCTCAGCTTCTC 13059 Query 46260 CAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAA 46319 |||||||| || || || |||||| |||| |||||||||||||| ||| || Sbjct 13060 GAACGAGCTCATTAGTCGAGATGAGGGCATGCACACGGACTTTGCGTGCCTCATGTACTC 13119 Query 46320 CACTCGCGTGCACGACAAGCTTGCGCCCGAC-ACCGTGCTGAGCATGTTCAAG---GAGG 46375 || | ||| || ||||| |||||| |||| | | || | ||| || | Sbjct 13120 CAAGCTAGTGAAC---AAGCT---GCCCGAGGACCGCGTCCA-CACGATCATTCGCGACG 13172 Query 46376 CGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGA 46435 | ||| | || ||| | |||||| | || | | ||||||| || ||| | ||||||| Sbjct 13173 CAGTGACGATCGAGCACGAGTTTGTGCGGGACTCGCTGCCCGTTGAGCTGATTGGCATGA 13232 Query 46436 ACGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGC-AGCTT 46494 || | | |||||| | ||||| ||||||||||||||||| ||| | || | ||| Sbjct 13233 ACTCGGCGCTCATGTGCCAGTACATTGAGTTTGTAGCGGACCGCCTG-TTGTACTCGCTC 13291 Query 46495 CACCAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTG 46554 | | ||||| ||| || || || |||||||| | ||| ||| ||||| || Sbjct 13292 GGCGTGTCGAAGATTTTCCATGCAAAGAACCCATTTGACTGGATGGACATGATCTCGCTT 13351 Query 46555 GAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 ||||||| || || |||||||| ||||| || |||||||| Sbjct 13352 CAGGGCAAGACGAACTTTTTCGAGAAGCGTGTGGGCGAGTA 13392 >seq179 Length=46302 Score = 118 bits (130), Expect = 1e-21 Identities = 723/1138 (64%), Gaps = 40/1138 (4%) Strand=Plus/Plus Query 145034 ATCAAGTCGTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGC 145093 ||||| || | || | ||||| || || | | ||||||||| |||| ||| || || Sbjct 20850 ATCAATTCCTTCATCAGGTACTTGTTTACAATCGTAAACTCGCCAGCCAGCACGCGGCGG 20909 Query 145094 AAATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTC 145153 |||| || |||||| | || |||| |||||||| |||||||| || || || ||| Sbjct 20910 TTGTACATATTCGACGTGTACGGCTCAATCGACTCGTTGTTGCCCAGAATCTGGGCCGTC 20969 Query 145154 GTTGCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCT 145213 | || || ||||| |||||| | | || ||||| | ||| | ||| | | || Sbjct 20970 GAAGCCGTCGGCATTGGCGCCACGAGCAGAGAGTTGCGAATGCCATACTTGATCACGTTC 21029 Query 145214 TCCTTTAGCGTACCCCAATCCCATAGC---GAAGTCGGCCTCACGTCCCACATGTCGTAC 145270 ||||| | | ||| ||||| || || | |||| | ||| ||||||||||| || Sbjct 21030 TCCTTCAACTCCGTCCAGTCCCAAAGACCTGACGACGGCGTGACGCCCCACATGTCGAAC 21089 Query 145271 TGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGT-TTT 145329 || || || |||| ||| || || ||| || || | || || | ||||| | || Sbjct 21090 TGGAAGATCCCCTTGCTCGCTGGAGAGCCCTGGAACG-TCTCGTACGGACCCAATTCCTT 21148 Query 145330 GGCGAGCTCGCAAC-TCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGT 145388 ||| | ||| || | || || || | || | || || |||||| || | | | | Sbjct 21149 GGCAATCTC-CATCGACGTCTTCATCGAAGCGTAGTAGATCGTCTCGAAGATGTTCTTAT 21207 Query 145389 TGAGCAGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGA 145448 | ||| | ||||| ||||| || ||| | || || | ||| ||||| |||| Sbjct 21208 TCAGCTCCCGCGCTTGCTCGCTTTCAAACGCGTAGTTCATGAGAATAAACGCATCCGCGA 21267 Query 145449 GCCCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGA 145508 | ||||| | || | ||||| || || || ||||||| | | | || | | Sbjct 21268 GACCCTGGACACCAATGCCGACTGGACGGTGGCGCATGTTGGACGTGCGAGCTTCTGCAA 21327 Query 145509 TAGGATATCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGT 145568 || || ||| || || | || |||| ||| ||| || || | || | || Sbjct 21328 CGGGGTAGTAATTCACCTCAATCACCTTGTTCAGGTTACGCGTCACGACGCTGGTCACGT 21387 Query 145569 GCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCAACGACC--ACACAGCTATTGACGGC 145626 || ||| | | | |||| | || ||||| | | |||| || Sbjct 21388 CGTACAGCTTCTTGTAATTAAACACGCCGTCTTCAACAAACTTGGGCAGC--------GC 21439 Query 145627 GATCGACGCCAAATTACAAACTGCCGTCTCCT-CGGCGTCGCTGTATTGTACGATCTCGG 145685 | ||||||||||||||| || ||| || | ||||| || || | | | | || Sbjct 21440 TACCGACGCCAAATTACACACCGCCACTTCATCCGGCGACG-TGAACTCCATCACTTCAC 21498 Query 145686 CGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCAC- 145744 |||||| || || | ||| || || || || ||||| || ||| | ||| ||| Sbjct 21499 AGCACAAGTTACTGGACCGGATCGTGCCAAGGTTCTGCTGGTTCGATTTGCGGTT-CACT 21557 Query 145745 GCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT--AAAAC 145802 || ||||| |||||||| | || | || || || | ||||| |||| ||| |||| Sbjct 21558 GCATCCTTATAGAGCATAAAGGGCACTCCCGTTTCAATCTGCGCATCCAAGATCGCAAAC 21617 Query 145803 GGTGCAAGTCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTA--TTTCCT 145860 || | ||| ||| | | || | || ||||||| |||||| |||| | Sbjct 21618 --CACAGCTGCTGGGCATTGATCGTCTTCCTCGCCCGTCCCTCTTGTTCGTACTTTTCAT 21675 Query 145861 GTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACA 145920 | || ||||||| || || || | ||| |||| || ||| | || ||||| Sbjct 21676 ACAAAG--TCTCAAACTCGTCGCCCCAGTACTCGTACAGCCCTGGAGCTTCATTTGGACA 21733 Query 145921 CATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAG 145980 | || ||| || || || | || || | ||| || | ||| || ||||||| Sbjct 21734 GAACAAACTCCACTTACCATTTGCTTCCACCCGTTTCATGAATAGATCGGGTACCCACAA 21793 Query 145981 CGCGTACATCAAGT--CGCGCGCTTTGCAATCCTCAGCACCCATG-TTTCGCTTCAAATT 146037 ||| | | ||||| ||||| | || | | ||| ||||| ||| | ||||| Sbjct 21794 CGCAAAGAACAAGTCCCGCGCCCGATGGAGT--TCA-TTGCCATGATTTTTCCGCAAATC 21850 Query 146038 AAGCACACT-ATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTC 146096 || | ||| | | | ||| |||||||||||||| | |||| || | | |||||| | Sbjct 21851 GAG-AAACTCAAACACGTCTGCGTGCCACGGTTCCAAGTAGATCGCAAACGATCCTTTGC 21909 Query 146097 GTTT---GCCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGG 146151 |||| |||||| || ||||||| ||| || ||| ||||| ||||| | |||||| Sbjct 21910 GTTTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCATTAAACACGCGAAGCATGGG 21967 >seq315 Length=59289 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| || ||||| | || | ||||| ||||| || |||||||| ||||| Sbjct 38568 GCCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCGCT 38627 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || ||| || ||||||||||| || |||| | ||||||||||| || || Sbjct 38628 CAGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGG 38687 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| |||||||| | | || | | || | | ||| | Sbjct 38688 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCAC 38747 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| | || | || || || || | || || |||||||||||||| Sbjct 38748 GTCCAGCGTGATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCAT 38795 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| || ||||| | || | ||||||||||| || ||||| || || || Sbjct 38265 GCCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTATAGTCACT 38324 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || ||| || ||||||||||| || |||| | ||||||||||| || || Sbjct 38325 CAGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGG 38384 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| |||||||| | | || | | || | | ||| | Sbjct 38385 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCAC 38444 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||| | || | || || || || | || || ||||||||||||||| Sbjct 38445 GTCCAGCGTGATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCATG 38493 >seq8027 Length=1067 Score = 98.7 bits (108), Expect = 9e-16 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 145069 AAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGTTCAAAAGACTC 145128 |||||| |||| ||| || || || ||| | |||||| || |||| |||||| |||| Sbjct 142 AAACTCACCGGACAAGACGCGGCGGGTATAGAGGTTAGATGTATAGGGCTCAAAACACTC 83 Query 145129 GTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACCAATAATGAATT 145188 ||||||||| || || |||| ||| | || || |||||| ||| || ||||| || || Sbjct 82 GTTATTGCCGAGAATCTGAGAGGTTGAAGCAGTCGGCATGGGCGCAACTAATAAAGAGTT 23 Query 145189 GCGCAGGCCGTG 145200 ||||||||| || Sbjct 22 GCGCAGGCCATG 11 >seq479 Length=33999 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/130 (76%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 131007 GCCACCGC---GCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC 131063 |||||||| ||| ||| ||||| | || | ||||||||||| || |||||||| || Sbjct 31129 GCCACCGCCACGCAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 31188 Query 131064 GCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGG 131123 || || || ||||||||||||||||| ||| |||| | |||||||||||| || Sbjct 31189 CGACAGAGTACGACCATCCTCTAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGG 31248 Query 131124 AGGGATTCCT 131133 || |||||| Sbjct 31249 CGGAATTCCT 31258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471958028814720