Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq315 111 1e-19 seq1314 91.5 1e-13 >seq315 Length=59289 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| |||||||| || ||||| || |||||||||||| || || | |||| Sbjct 38584 AGCACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCGTCT 38643 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || ||||| ||| | || |||||||| ||||| || | |||||| ||||| Sbjct 38644 TCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 38703 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | ||||||||| | | | | | ||| |||||| |||| ||||| || Sbjct 38704 TGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTC 38763 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || || |||| ||| || || ||||||||||| ||| Sbjct 38764 TTCCCTGTCAACGTCTTCACGAAAATCTGCATCTTG 38799 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| |||||||| |||||||| || ||||| ||||| || || | |||| Sbjct 38281 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTATAGTCACTCAGCGTACGGCCGTCT 38340 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || ||||| ||| | || |||||||| ||||| || | |||||| ||||| Sbjct 38341 TCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 38400 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | ||||||||| | | | | | ||| |||||| |||| ||||| || Sbjct 38401 TGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTC 38460 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || |||| ||| || || ||||||||||| Sbjct 38461 TTCCCTGTCAACGTCTTCACGAAAATCTGCAT 38492 >seq1314 Length=13110 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 16746 CCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAA 16805 ||||||| ||||||||||| | | || |||| |||| ||| ||||| ||| | | Sbjct 2067 CCTTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTGCCGGCAAAGA 2126 Query 16806 TAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGC 16865 | || ||||| ||||| ||| | ||| || || || ||| | ||||||||| | | Sbjct 2127 TCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGCTTCACATTGT 2186 Query 16866 CCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAA 16925 | | ||||| |||||| |||| ||||| || || || |||| ||| || |||| Sbjct 2187 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATCGTCTTGCCTGTCAACGTCTTCACAA 2246 Query 16926 AAATCTGCAT 16935 | |||||||| Sbjct 2247 AGATCTGCAT 2256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405042169736170