Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq8979 140 2e-28 seq840 122 6e-23 seq2156 116 2e-21 seq9064 113 3e-20 seq3028 107 1e-18 seq4039 93.3 3e-14 seq4110 87.8 1e-12 >seq8979 Length=1466 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1328 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1387 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1388 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1422 >seq840 Length=28686 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||| ||||||||||| || |||||| | Sbjct 24724 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCAT 24783 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||| ||||||||||| Sbjct 24784 TAATCCATTCATGCGCGTCACTAGTTAGATGACGA 24818 >seq2156 Length=6842 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 1978 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCGC 2037 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||||||| Sbjct 2038 AGCCATATTTAGCCTTA 2054 >seq9064 Length=1186 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 280 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 221 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 220 ACCAATATTTAGCTTTA 204 >seq3028 Length=3825 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 1758 CTCTCTCTTCAAAGTACTTTTCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTTTCGT 1699 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||||||||| Sbjct 1698 GGCCGTATTTAGCCTTA 1682 >seq4039 Length=2236 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||| |||| |||||||||||||||||||||||| | Sbjct 564 CTCTCTTTTCAAAGTCCTTTTCATCTTTACCTCGCGGTACTTGTTCGCTATCGGTCTCTC 623 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 624 GCCCGTATTTAGCCTT 639 >seq4110 Length=2169 Score = 87.8 bits (96), Expect = 1e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 19950 TCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGT 20009 ||| ||| |||| ||||||| ||||||||||||||||| |||| ||||||||||| | | Sbjct 1411 TCTATTCGAAGTGCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCTCTCAGG 1470 Query 20010 AATATTTAGCCTT 20022 | ||||||||||| Sbjct 1471 AGTATTTAGCCTT 1483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334909305225173