Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_008194.1 Length=74483 Score E Sequences producing significant alignments: (Bits) Value seq1434 179 2e-40 seq317 104 1e-17 >seq1434 Length=11778 Score = 179 bits (198), Expect = 2e-40 Identities = 356/524 (68%), Gaps = 5/524 (1%) Strand=Plus/Plus Query 65633 CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 65692 ||||| |||||||||||||| ||||||||||| | || | || || |||||| Sbjct 11005 CAGCCTGACACTGGCGAGCAAGCCCTGGAGATTGCCGATATGCTGGTGCGCTCTGGCTCC 11064 Query 65693 CTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGC 65752 || ||||| || |||||||| || || ||| || || || ||||| |||||||| Sbjct 11065 GTGGATATCGTGGTGGTTGACTCCGTTGCCGCCTTGACTCCACGTGCCGAAATCGAAGGC 11124 Query 65753 GACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAG 65812 || || || || || ||| | || |||| ||||| | ||||| || ||| ||||||| Sbjct 11125 GAAATGGGTGATAGCCACATGGGTTTGCAAGCGCGGTTGATGTCACAAGCCCTGCGCAAA 11184 Query 65813 CTCACTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAG 65872 || || || | |||| | ||||| || ||| | ||| | |||||| | || | Sbjct 11185 CTTACGGGTAACATCAAGCGTACCAATACCCTGGTGATCTTCATTAACCAGATCCGTATG 11244 Query 65873 AAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGG 65932 || |||||| | || | |||| || |||||||| ||||| || || ||| | Sbjct 11245 AAAATCGGCGTCATG---TTCGGCAATCCTGAAACCACCACAGGCGGTAACGCACTGAAG 11301 Query 65933 TTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAG 65992 || ||| |||| || ||| ||||| |||| |||| | | || || |||| |||||| Sbjct 11302 TTTTACTCCTCTGTACGCTTGGATATCCGCCGCACGGGCGCCATCAAAAAAGGTGATGAG 11361 Query 65993 GCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGC 66052 | | ||| ||| || || ||| |||| |||||| |||| || || | Sbjct 11362 GTGATTGGCTCTGAAACCAAAGTCAAAGTCATCAAAAACAAGGTGGCGCCACCCTTCAAA 11421 Query 66053 AACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTG-AGGTCGAACTCCTCGA 66111 | || |||||| | | ||||||| ||||||||||||||| |||| || | |||| Sbjct 11422 CAGGCTGAGTTCGACATAATGTACGGTGAGGGCATCTCGCGTTTAGGT-GAGGTGATCGA 11480 Query 66112 CCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGT 66155 |||| | | ||||| |||||||||||||||||| Sbjct 11481 ACTGGGCACCAACCTTAAACTGGTAGAGAAGTCGGGCGCCTGGT 11524 >seq317 Length=46315 Score = 104 bits (114), Expect = 1e-17 Identities = 189/273 (69%), Gaps = 8/273 (3%) Strand=Plus/Minus Query 65552 GCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGAC 65611 |||| || ||||| |||||| | | ||| | | |||||||||||| | ||||| ||| Sbjct 31138 GCCTTTATTGACGCGGAGCACGCGATTGACGCCCACTACGCCAAGGCGTTGGGTGTCGAC 31079 Query 65612 CTCGACAACCTCGTGGTGGTT--CAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTG 65669 | | | ||| | || | ||||| ||| |||| || | || |||||||||| || Sbjct 31078 ATTG--ATGCTCTTTATGTCTCGCAGCCCGACTCTGGAGAAGAAGCGCTGGAGATCGCTG 31021 Query 65670 ACCTCCTCGTCAAGTCTGGCGAGCTGTC--CATCGTCGTCGTTGACTCTGTGGCGGCCCT 65727 || || ||| ||| | |||| ||| | | ||||| | ||| ||| || ||||| Sbjct 31020 ACACACTGATCAGGTC--GGGAGCAGTCGACCTTGTCGTGCTAGACAGTGTAGCTGCCCT 30963 Query 65728 GGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCG 65787 ||||| || || ||||| ||||| || || || ||| || | | ||||| || || Sbjct 30962 CGTGCCCCGAGCAGAGCTGGAAGGGGAAATGGGAGACCAGCAAATTGCTCTGCAGGCACG 30903 Query 65788 CCTCATGTCGCAGGCCATGCGCAAGCTCACTGG 65820 ||| ||| || || |||||||||| ||||| Sbjct 30902 CCTAATGAGTCAAGCTCTGCGCAAGCTGACTGG 30870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238193848517572