Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq179 163 4e-35 seq69 149 8e-31 seq5172 136 5e-27 seq8027 102 1e-16 >seq179 Length=46302 Score = 163 bits (180), Expect = 4e-35 Identities = 763/1204 (63%), Gaps = 8/1204 (1%) Strand=Plus/Plus Query 62487 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATG 62546 |||| || || || |||||||| |||||||| || || |||||| | ||| ||||| | Sbjct 21178 CGTAGTAGATCGTCTCGAAGATGTTCTTATTCAGCTCCCGCGCTTGCTCGCTTTCAAACG 21237 Query 62547 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62606 || || | |||||||||||| || || | || || |||||||| |||| || | | Sbjct 21238 CGTAGTTCATGAGAATAAACGCATCCGCGAGACCCTGGACACCAATGCCGACTGGACGGT 21297 Query 62607 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 62666 | | | | || || | |||||||| || || || ||||| | || || | || | Sbjct 21298 GGCGCATGTTGGACGTGCGAGCTTCTGCAACGGGGTAGTAATTCACCTCAATCACCTTGT 21357 Query 62667 TGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT 62726 | || || | | || || ||| || | ||| || ||| ||| || | Sbjct 21358 TCAGGTTACGCGTCACGACGCTGGTCACGTCGTACAGCTTCTTGTAATTAAACACGCCGT 21417 Query 62727 CTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 62786 || |||||| || || || || || |||| |||||| || || || |||| | Sbjct 21418 CTTCAACAAACTTGGGCAGCGCTACCGACGCCAAATTACACACCGCCACTTCATCCGGCG 21477 Query 62787 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 62846 || | | || | ||| ||| | ||||| || ||| || || | || || | Sbjct 21478 ACGTGAACTCCATCACTTCACAGCACAAGTTACTGGACCGGATCGTGCCAAGGTTCTGCT 21537 Query 62847 GATTACTCTTTTTGTTACAC-GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATC 62905 | || | ||| | | ||| ||||||||||| || || || || || ||||||||| Sbjct 21538 GGTT-CGATTTGCGGTTCACTGCATCCTTATAGAGCATAAAGGGCACTCCCGTTTCAATC 21596 Query 62906 TGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCTT 62964 || | || | ||||| ||| | | || | || || || | || | | | | Sbjct 21597 TGCGCATCCAAGATCGCAAACCACAGCTGCTGG-GCATTGATCGTC--TTCCTCGCCCGT 21653 Query 62965 TTCTCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGT 63022 ||||| ||||| | |||||| || |||||||| ||||| | || ||| Sbjct 21654 CCCTCTTGTTCGTACTTTTCATACAAAGTCTCAAACTCGTCGCCCCAGTACTCGTACAGC 21713 Query 63023 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 63082 || ||| ||||| ||||| | ||| ||||| || | | | ||| |||||||| Sbjct 21714 CCTGGAGCTTCATTTGGACAGAACAAACTCCACTTACCATTTGCTTCCACCCGTTTCATG 21773 Query 63083 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63142 || ||||| || | ||| | || | || | || | | | ||| || || || Sbjct 21774 AATAGATCGGGTACCCACAACGCAAAGAACAAGTCCCGCGCCCGATGGAGTTCATTGCCA 21833 Query 63143 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63202 ||| || | |||||| ||| | | | || | ||||||||||||||||| || Sbjct 21834 TGATTTTTCCGCAAATCGAGAAACTCAAACACGTCTGCGTGCCACGGTTCCAAGTAGATC 21893 Query 63203 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63262 || | ||| |||||| || || ||||| | ||||| || |||| |||| | Sbjct 21894 GCAAACGATCCTTTGCGTTTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCATTAAAC 21953 Query 63263 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCA 63322 || | | ||| || ||||| || || || | ||||| || ||| ||| ||||| Sbjct 21954 ACGCGAAGCATGGGGATAATCCCGTTCGAAGAGCCATTAGTGCCTCGGATGTAGCTATTC 22013 Query 63323 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63382 |||| || ||||| || | || || || |||||| ||| || || | || Sbjct 22014 GTGGCCCGGATATTGTGCATACTAATGCCAATCCCTCCTGCCCATTTCGAAATGCACGCA 22073 Query 63383 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 63442 ||| |||| || ||||||||||| || || || |||||| |||| | || ||| Sbjct 22074 CATTGTTTCAAGGTATCATAGATTCCTTCAATGGAATCATCTTTCATAGCCAATAAAAAG 22133 Query 63443 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTA 63502 || ||||| |||| | ||| || || |||||||| | || || | || || ||| Sbjct 22134 CACGAAGACAATTGGGGGCGAGGGGTACCGGCATTAAACAGCGTCGGGGTCGCATGGGTA 22193 Query 63503 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGA 63562 || | || | || | || | || || || | || | | || ||| || ||| Sbjct 22194 AAAAACTTCTGCGACATTAATTCATATGTTTCCAACGCAGCGATAATGTCCTGTTTATGG 22253 Query 63563 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 63622 || || | ||||| || | | ||| || || || | ||| |||| || ||| | Sbjct 22254 ATGCCAATCGCGACTCGTAAAATCATCTGTTGCGGCCGTTCGACGACTTTACCGTTGACC 22313 Query 63623 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 63682 ||||| || | ||| | |||||||| |||||||||| ||| || || || Sbjct 22314 CGAAACAAATAACCTCGTTCGAGGGTTTTAAACCCAAAATAGTCATATTCGAAATCCCGG 22373 Query 63683 TCGT 63686 |||| Sbjct 22374 TCGT 22377 >seq69 Length=63067 Score = 149 bits (164), Expect = 8e-31 Identities = 392/591 (66%), Gaps = 13/591 (2%) Strand=Plus/Minus Query 32682 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 32741 ||||| |||| |||||| | ||||| || || |||| || ||||| || || ||||| Sbjct 13086 CCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCGCGCTTC 13027 Query 32742 TTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAA 32800 || |||||||| || || ||| || || || || |||||||| ||||| || | ||||| Sbjct 13026 TTCAGCCAAAAGATCGA-GCAGAACGAGCCCGAGAAGAAAATGCCTTCGACCGAGGCAAA 12968 Query 32801 GGCAATAAGTCTCTCTCCATAACCGGCGCTG-TCATGTATC----CACTTTTGAGCCCAA 32855 || | || | ||| | || || | | | || || ||||| | |||||| Sbjct 12967 TGCCAGCAGCCGCTCCGCGTA--CGAAGATACTTGTGGGTCGCACCACTTGAGCGCCCAA 12910 Query 32856 TCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCA 32915 | ||| |||||| ||||| || || ||||| || || | || | | || || Sbjct 12909 TTGGCTTTCTTTCGAACACACGGGATGGTCTCAATCGCGCGCAGAAGGTGATCCTTCTCC 12850 Query 32916 TTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCA 32975 | ||||||| || || ||||| | || ||| | |||||| || ||||||||| Sbjct 12849 GTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAATAGACTTCCGAGTGGATGTTTTCA 12790 Query 32976 ATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAAT 33035 || || || || || || || ||||| | ||| || | | || ||||| | | ||| Sbjct 12789 ATCGCGATCTGGAAGCCATAAAAGCACCGAGCTTCCGGCACTTGCACTTCATTGCTAAA- 12731 Query 33036 CGTTC--TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACAT 33093 |||| || | ||| || ||||| || || |||||||||||||| || || | |||| Sbjct 12730 -GTTCATGGCCAGATTCTCGTTCACAATGCCATCACTGGCTGCAAAGAAGGCGAGCACAT 12672 Query 33094 GTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 33153 | || ||||| | || | || || || ||| || |||| ||| | | Sbjct 12671 GCTTGATAAAGTGACGCTCATTGTCCGTGAGGTTCGCCCAGTCCTTGAGATCGTGCACCA 12612 Query 33154 TATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGT 33213 || | || || | ||||| || || || || ||||| || ||||| | ||| | || Sbjct 12611 AGTCTAGCTCCTCAGCAGTCCAGAACGAAGCTTCCGCCTTCTTGTACATCTGCCACACGT 12552 Query 33214 CATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGA 33264 | || | ||| || ||||| | ||||| | || || || || |||||| Sbjct 12551 CGTGCTCTTGGATCGGAAAGAGCACAAAGCGGTTGGGGTTCTTCACAAGGA 12501 >seq5172 Length=1594 Score = 136 bits (150), Expect = 5e-27 Identities = 426/648 (66%), Gaps = 15/648 (2%) Strand=Plus/Plus Query 32360 AACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAA 32419 ||| ||| |||||| || ||| ||||||||||| || ||||| ||||| |||| ||| Sbjct 952 AACACCCGCTTTTTGATACTCAGAGACACGTTTTTCAAAGAAATTGGTTTTGCCTTGTAA 1011 Query 32420 TGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAA 32479 ||| || |||||| || || || ||||| | | | ||| ||||| |||| Sbjct 1012 TGAAATCAGTTCCATAAAGTCAAAGGGATTTTGAGCGTGATACATTTTGGGCTCACCCAG 1071 Query 32480 T-TCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCA 32538 | |||| | || | || || ||||| || || || |||||||| ||| |||| Sbjct 1072 TGTCAGTAG-CAGGCGGTCAGCAACAAACTCGATGTACTGTTTCATCAGGTCAGCGTTCA 1130 Query 32539 TTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGT 32598 | || || || || || | || | || | |||||| |||||||| | ||||||| Sbjct 1131 TACCGATCAGGCGTACAGGCAAGGCATCGGTGACAAATTCCTGTTCAATTGCAACCGCGT 1190 Query 32599 CTGTTATAATAGATCTTACTGTTTC-TTCACTCGGTGGATACAATAAA---TGTTTAAAC 32654 | | ||||| || || | |||| ||| | | |||| || | || Sbjct 1191 CGGCAATAAT----CTCACGCAGGCGTTCAGCCGGGAGCTTATTTAAAAGCTGCTGGTAC 1246 Query 32655 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 32714 | ||| || ||||| || || | || || || | | || | ||| || ||||| Sbjct 1247 AGCAAGCAGGCGAAGTCAGTATGCATGCCTTCATCGCGAGAGATCAGTTCATTTGAAAAA 1306 Query 32715 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGA 32773 | | || ||||| |||||||||||||||||||| || ||||| ||| | | | ||||| Sbjct 1307 CTCAAGCCCGGCATCAGGCCACGCTTTTTAAGCCAGAAAATGGA-GCAGAAGCTACCAGA 1365 Query 32774 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTC 32833 ||||||||| ||||| | || |||||||| | ||| | ||| || || | || || | Sbjct 1366 AAAGAAAATGCCTTCAATGGCGGCAAAGGCGACAAGGCGCTCAGCA-AAGCTGC-CT-TT 1422 Query 32834 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 32893 | ||||| ||||||| || || || | || ||||||| || || || || Sbjct 1423 TTCGATCCAGCGCAGAGCCCACTCAGCTTTGCGGGTGACGCAAGGCAGGGTTTCAATCGC 1482 Query 32894 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 32953 || || ||||||||| | | || || ||| ||||| | || ||| || Sbjct 1483 GCGGAACAGGCGATTTTTTTCACTTGTGTCGCGAATATAAGTATCCAGCAGTAGAGCGTA 1542 Query 32954 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCA 33001 |||| ||||| ||||| || || || ||||| ||||| || || Sbjct 1543 GGTTTCAGAATGGATGTTCTCCATCATGATCTGAAAACCGTAAAAACA 1590 >seq8027 Length=1067 Score = 102 bits (112), Expect = 1e-16 Identities = 290/445 (65%), Gaps = 3/445 (1%) Strand=Plus/Minus Query 61870 TGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAA 61929 ||| | ||| || || || |||||||| || ||||| || || |||| || ||||| Sbjct 472 TGCAGATTTTGTCCGCAGGTAGTACATGCCGGTTTTGAGGCCTTTTTTCCAGCCATAAAA 413 Query 61930 ATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACT 61989 |||||| || || ||||| || || || | | ||| | ||| | || ||| Sbjct 412 ATGCATGGAGGTCAGCTTGGAGTAGCTGGGGCTTTCCATAAACAGATTTAAGGACTGAGA 353 Query 61990 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTC 62049 ||| ||| ||||| || | ||| || ||||| | || | | || ||||| Sbjct 352 CTGACAGATAAAGGCGCCACGGTCAGCTGCCATATCGATCAGGGCACGCTGCTTGATTTC 293 Query 62050 CCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTC---TGAATGGA 62106 ||| | ||||| || | | ||| || | ||| |||| | | | || ||||| || Sbjct 292 CCAGACGGTTTTGTAGATTTCCTTGATGTTTTCAGGAATCTCAGGAATCGCCTGAATTGA 233 Query 62107 TCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAA 62166 |||| | || ||||| |||| |||| | |||||||||| | ||| ||| Sbjct 232 TCCATTGGCAGCAATAATTTTATTTTTGAGCACATCATTCCACAGACCCAGCTCAACTAA 173 Query 62167 AACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTA 62226 | | || ||||| ||||| || ||| || || ||||| || | || || || Sbjct 172 GTCGCGCAGCAGATGTTTGTTAACAACAATAAACTCACCGGACAAGACGCGGCGGGTATA 113 Query 62227 AATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 62286 | ||| ||||| || || | | |||| ||||| || | ||| |||| ||||| || Sbjct 112 GAGGTTAGATGTATAGGGCTCAAAACACTCGTTATTGCCGAGAATCTGAGAGGTTGAAGC 53 Query 62287 AGTCGGCATAGGTGCCACCAATAAA 62311 ||||||||| || || || |||||| Sbjct 52 AGTCGGCATGGGCGCAACTAATAAA 28 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633558474926800