Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq315 122 8e-23
seq1314 107 2e-18
>seq315
Length=59289
Score = 122 bits (134), Expect = 8e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| ||||| || || | ||||| | || |||||| |||||
Sbjct 38795 ATGCAGATTTTCGTGAAGACGTTGACAGGGAAGACGATCACGCTGGACGTGGAGCCGTCT 38736
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||| | || || ||||||| || ||| ||||| || || || || ||||||||
Sbjct 38735 GACTCGATTGACAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 38676
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
|||||| | || ||||||||||| || | ||||| | || || || |||| |||||
Sbjct 38675 CAGCGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGTACGCTGAGCGACTACAAC 38616
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || ||||| ||||| || | |||||
Sbjct 38615 ATCCAGAAGGAATCGACGCTGCACCTGGTGCT 38584
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| ||||| || || | ||||| | || |||||| |||||
Sbjct 38492 ATGCAGATTTTCGTGAAGACGTTGACAGGGAAGACGATCACGCTGGACGTGGAGCCGTCT 38433
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||| | || || ||||||| || ||| ||||| || || || || ||||||||
Sbjct 38432 GACTCGATTGACAATGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAG 38373
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
|||||| | || ||||||||||| || | ||||| | || || || | || || ||
Sbjct 38372 CAGCGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGTACGCTGAGTGACTATAAC 38313
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || || ||||| || | |||||
Sbjct 38312 ATCCAGAAGGAGTCGACGCTGCACCTGGTGCT 38281
>seq1314
Length=13110
Score = 107 bits (118), Expect = 2e-18
Identities = 140/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 24993 GGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAG 25052
|||| ||||| || ||||| ||||| ||||| || || | ||||| | || ||||||
Sbjct 2262 GGAATCATGCAGATCTTTGTGAAGACGTTGACAGGCAAGACGATCACGCTGGACGTGGAG 2203
Query 25053 TCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112
|||| |||| || || ||||||| || || || || ||||| ||||| |||
Sbjct 2202 CCGTCCGACAGCATTGACAATGTGAAGCAGAAGATTCAGGATAAGGAAGGCATTCCTCCT 2143
Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172
||||| ||||| | || ||||||||||| ||| | ||||| | |||||| | ||
Sbjct 2142 GACCAGCAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGACGGTCGCACGCTCTCGGAC 2083
Query 25173 TACAATATTCAAAA 25186
||||| || |||||
Sbjct 2082 TACAACATCCAAAA 2069
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433278974759645
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |