Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq5172 98.7 1e-15
>seq5172
Length=1594
Score = 98.7 bits (108), Expect = 1e-15
Identities = 237/355 (67%), Gaps = 8/355 (2%)
Strand=Plus/Plus
Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141
||||| ||||| || ||||| ||||| | ||||| || || || |||| |||||
Sbjct 1243 GTACAGCAAGCAGGCGAAGTCAGTATGCATGCCTTCATCGCGAGAGATCAGTTCATTTGA 1302
Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA-CTAC 93200
|| | || || || | ||| || || || || ||||| || || || ||| || ||||
Sbjct 1303 AAAACTCAAGCCCGGCATCAGGCCACGCTTTTTAAGCCAGAAAATGGA-GCAGAAGCTAC 1361
Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260
||||||| || || ||||| | ||| ||||| || |||| || || ||||| || |
Sbjct 1362 CAGAAAAGAAAATGCCTTCAATGGCGGCAAAGGCGACAAGGCGCTCAGCAAA----GCTG 1417
Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320
|| | |||||| | |||||| || ||||| | | ||||| || ||||
Sbjct 1418 CCTTTTTC--GATCCAGCGCAGAGCCCACTCAGCTTTGCGGGTGACGCAAGGCAGGGTTT 1475
Query 93321 CGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACA 93380
| || ||| || ||| || | || | || || || || ||||| | | |
Sbjct 1476 CAATCGCGCGGAACAGGCGATTTTTTTCACTTGTGTCGCGAATATAAGTATCCAGCAGTA 1535
Query 93381 GAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACA 93435
||| || |||||||||||| |||||||| || || || ||||| |||||
Sbjct 1536 GAGCGTAGGTTTCAGAATGGATGTTCTCCATCATGATCTGAAAACCGTAAAAACA 1590
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556796183264920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |