Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq5172 98.7 1e-15 >seq5172 Length=1594 Score = 98.7 bits (108), Expect = 1e-15 Identities = 237/355 (67%), Gaps = 8/355 (2%) Strand=Plus/Plus Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 ||||| ||||| || ||||| ||||| | ||||| || || || |||| ||||| Sbjct 1243 GTACAGCAAGCAGGCGAAGTCAGTATGCATGCCTTCATCGCGAGAGATCAGTTCATTTGA 1302 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAA-CTAC 93200 || | || || || | ||| || || || || ||||| || || || ||| || |||| Sbjct 1303 AAAACTCAAGCCCGGCATCAGGCCACGCTTTTTAAGCCAGAAAATGGA-GCAGAAGCTAC 1361 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 ||||||| || || ||||| | ||| ||||| || |||| || || ||||| || | Sbjct 1362 CAGAAAAGAAAATGCCTTCAATGGCGGCAAAGGCGACAAGGCGCTCAGCAAA----GCTG 1417 Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 || | |||||| | |||||| || ||||| | | ||||| || |||| Sbjct 1418 CCTTTTTC--GATCCAGCGCAGAGCCCACTCAGCTTTGCGGGTGACGCAAGGCAGGGTTT 1475 Query 93321 CGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACA 93380 | || ||| || ||| || | || | || || || || ||||| | | | Sbjct 1476 CAATCGCGCGGAACAGGCGATTTTTTTCACTTGTGTCGCGAATATAAGTATCCAGCAGTA 1535 Query 93381 GAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACA 93435 ||| || |||||||||||| |||||||| || || || ||||| ||||| Sbjct 1536 GAGCGTAGGTTTCAGAATGGATGTTCTCCATCATGATCTGAAAACCGTAAAAACA 1590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556796183264920