Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq69 134 3e-26 seq113 122 2e-22 seq4 111 3e-19 >seq69 Length=63067 Score = 134 bits (148), Expect = 3e-26 Identities = 483/746 (65%), Gaps = 21/746 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||| || || | |||||||| || ||||| | ||||| |||| || ||||| | Sbjct 13374 TCGAAAAAGTTCGTCTTGCCCTGAAGCGAGATCATGTCCATCCAGTCAAATGGGTTCTTT 13315 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGC-TACGAAGATGCGGTCTGCCACAAACTCCAG 251681 |||| | | ||| | ||| || | ||| || | |||||| || |||||||| | Sbjct 13314 GCATGGAAAATCTTCGACACGCCGAGCGAGTAC-AACAGGCGGTCCGCTACAAACTCAAT 13256 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCAT----ACGACAAGGAATTGCCTCAC 251737 ||||| | ||| || | |||||||||||||||| ||| || | | || ||| Sbjct 13255 GTACTGGCACATGAGCGCCGAGTTCATGCCAATCAGCTCAACGGGCAGCGAGTCCCGCAC 13196 Query 251738 AGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAG 251797 | || || | ||| | | ||||| || | || | | || | || | Sbjct 13195 A----AACTCGTGCTCGATCGTCACTGCGTCGCGAATGATCGTGTGGACGCGGTCCTCGG 13140 Query 251798 ACAGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAACTGTTGGTGCAGACCCTCG 251856 |||||||||| | ||||| ||||||| ||| | ||| ||| | ||||| ||||| Sbjct 13139 GCAGCTTGTTCACTAGCTTGGAGTACATGAGGCACGC-AAAGTCCGTGTGCATGCCCTCA 13081 Query 251857 TCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916 || ||||| |||| |||||| || | | ||||||||||| | || || ||| | ||| Sbjct 13080 TCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCGCGCTTCTTCAGC 13021 Query 251917 CAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACA 251976 || ||||| | ||| || || || ||||| | | || ||||| | | |||| | Sbjct 13020 CAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTTCGACCGAGGCAAATGCCAGC 12961 Query 251977 AGGCGCTCAGCAAACG-----ACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCT 252031 || ||||| || ||| |||||| || | |||| | ||||| || | Sbjct 12960 AGCCGCTCCGCGTACGAAGATACTTGTGGGTCG--CACCACTTGAGCGCCCAATTGGCTT 12903 Query 252032 TCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCC-GCTCGGCATCG 252090 |||||| ||| ||||| || || || || | ||| | | ||| ||| | | Sbjct 12902 TCTTTCGAACACACGGGATGGTCTCAATCGC-GCGCAGAAGGTGATCCTTCTCCGTCGCC 12844 Query 252091 TCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAAC 252150 || | ||| || |||| || || || || | ||||| |||||| ||| | Sbjct 12843 TCTTTAATGTACGTGTCAATGAGCAGCGAATAGACTTCCGAGTGGATGTTTTCAATCGCG 12784 Query 252151 ATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTT 252210 |||||| | |||| || || || || | ||||| || |||||| | Sbjct 12783 ATCTGGAAGCCATAAAAGCACCGAGCTTCCGGCACTTGCACTTCATTGCTAAAGTTCATG 12724 Query 252211 GCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATG 252270 || | ||||| |||| |||||||| ||| ||||||||||| | || | |||||| Sbjct 12723 GCCAGATTCTCGTTCACAATGCCATCACTGGCTGCAAAGAAGGCGAGCACATGCTTGATA 12664 Query 252271 AAGTGACGCTCATCGTCGTTGAGCTT 252296 ||||||||||||| ||| |||| || Sbjct 12663 AAGTGACGCTCATTGTCCGTGAGGTT 12638 >seq113 Length=57615 Score = 122 bits (134), Expect = 2e-22 Identities = 430/666 (65%), Gaps = 32/666 (5%) Strand=Plus/Plus Query 279351 GATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACC 279410 || || ||| ||||||| |||||||| || || ||||| | ||| || | ||| | | Sbjct 47899 GACCTCTGTAACTGTGAGTTCTCGCTTGCTTACGGTGGTATGATCTTGTTGAACAATGCT 47958 Query 279411 CGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAG 279470 || ||| | |||||||| |||| || ||||| ||||||||| || |||||| Sbjct 47959 CGTCTCCGTCTTAAGCGTGGTCACCGTTACGGTCTGTGCGGTCCCAACGGGTGTGGTAAG 48018 Query 279471 AGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTA-ACGCATCTGA 279529 || || |||||||||||| | |||||||||||||| |||||||| | ||| | || Sbjct 48019 TCGACGCTGATGCGCGCCATTTCGAACGGTCAGCTGGAGGGATTTCCAAGCCGCGAC-GA 48077 Query 279530 GGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACTGTGTT 279589 | | | ||| |||| ||| |||||| || | | | || |||| ||||| | Sbjct 48078 GCTGAAGACTGTGTTTGTGGAGCACAACCTGCAGGCTTCGGAAGCGGAGCTGTCTGTGGT 48137 Query 279590 CGACTTCCTAACGTCTGACAATCAGGTTATGGAAATCAGCTCTCCTGAGGAAATC----A 279645 || ||| | | || | | | | ||| || | | | |||| || | Sbjct 48138 TGAGTTCATCCTGGTGGATGAGGACCTCAAGGA---CACCCCGCGCAAGGAGGTCGAGGA 48194 Query 279646 TCCAGAAACTGGAGGCCAATGGTTTT----GATGA-AAGAATGCGTAATCTGCCAGTAGG 279700 | | |||| | ||| || ||||| | | | || || || || || Sbjct 48195 CACTCTATCTGGTG-----TGGGCTTCACAGATGAGATGCAGGCCCAAGCT----GTCGG 48245 Query 279701 TTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGC 279760 |||| || || |||||||||||||| ||| || |||| || || || | | || Sbjct 48246 CACTCTTTCTGGCGGTTGGAAGATGAAATTGGAGCTGGCTCGTGCTATGCTGCGGAAGGC 48305 Query 279761 CGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCT 279820 ||| || | ||||| |||||||| || |||||| |||| || ||||| || ||||| Sbjct 48306 TGATATCTTGCTGCTCGATGAGCCGACGAACCACTTGGATGTCAAGAACGTGGCTTGGCT 48365 Query 279821 AGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGG 279880 | | || || || | |||| || || | || |||| || || ||||||||||| Sbjct 48366 GGAGAATTATCTCACTGGCCTGACTAACGTGACCTCGATCATGGTGTCGCACGACTCTGG 48425 Query 279881 CTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGA---GCAAAATCTGAAGCTCTC 279937 ||||| || || ||| | ||| |||||||| || || || ||||| ||| Sbjct 48426 TTTCCTCGACAAGGTCTGCACGAACATTATTCACTACGAGACGCGTAAGTTGAAGATCTA 48485 Query 279938 CAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTA 279997 |||| ||||| ||||| ||||||| || || |||||| || ||||| Sbjct 48486 CAAG------GGCAATCTGTCCAAATTCGTGGAGCAGAAGCCAGAGGCGAAGGCGTACTA 48539 Query 279998 TGACCT 280003 || || Sbjct 48540 CGAGCT 48545 Score = 102 bits (112), Expect = 2e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 |||||||| ||||| |||||||| || | ||||| | || || || ||| || | Sbjct 48724 GGACCCAACGGTGCCGGTAAGTCGACATTGATCAAGATGCTTACCGGTGAGGTTGAGCCT 48783 Query 280239 ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCT 280298 ||| || | |||||||| || |||||| | |||||||| |||||||| ||| Sbjct 48784 ACTTCTGGCCAGATGTGGAAGCACCCTTCCATGCGTTTCGCTTACGTGGCTCAGCATGCT 48843 Query 280299 TTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCG 280354 ||||||||||| ||| ||||| || |||| | ||||| ||||| |||||||| Sbjct 48844 TTCCACCACATTGAGTCGCACCTCGATGAGACTGCAAACCAGTACATCCAGTGGCG 48899 >seq4 Length=112988 Score = 111 bits (122), Expect = 3e-19 Identities = 267/399 (67%), Gaps = 14/399 (4%) Strand=Plus/Plus Query 218656 AAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAG 218715 ||||| || || || | ||||| |||||||| |||| ||||| ||||| || || Sbjct 79938 AAGGTGGCGCAATTAGCAGGTTACGTATCCGAGCACTCTGCGTACCACCACGGCGAACAA 79997 Query 218716 AGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAAC 218775 ||| |||||||| || || |||||||| || | ||| || || || ||||| || Sbjct 79998 AGTTTGCAGGGTTGTATCGTGAATATGGCACAAGATTTTGTTGGAAGCAATAACATTCAC 80057 Query 218776 TTGCTGCTCCCCAA-CGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTC 218834 | ||| || |||| ||||||||||||| | ||| | |||| || |||||| || Sbjct 80058 CTTCTG-TCGCCAATCGGTCAGTTTGGTACGCGTTTGATGGGCGGCAAGGATGCGGCAAG 80116 Query 218835 TGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATC---AGGC 218891 | | | || || || || || ||| || | || ||| || | | | ||| | Sbjct 80117 TTCTCGTTACATTTTCACCAATTTGGAGCAACTTACCCGCAAGATCTACGATCCTTTAGA 80176 Query 218892 CGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGGTA 218951 | ||||||||||| |||||| | || || || ||| ||||| ||||| |||||||| Sbjct 80177 CAATGATGTGCTC---AAGTATTTGGATGAAGACGGTCAATCGATCGAGCCGGAGTGGTA 80233 Query 218952 TGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAG---GGTT 219008 | || || || | ||||||| || || | | || || || |||| ||| Sbjct 80234 CATTCCGATCATCCCCATGGTGCTCGTCAACGGCACTGACGGCATTGGAACAGGTTGGTC 80293 Query 219009 CAGTACTGACATTCCTTCTTACAATCCCAAGGACATCAT 219047 |||| ||| |||| | ||||| || |||||||| Sbjct 80294 CAGTTCTG---TTCCGACGTACAACCCACTAGACATCAT 80329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027714550697003