Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq69 134 3e-26
seq113 122 2e-22
seq4 111 3e-19
>seq69
Length=63067
Score = 134 bits (148), Expect = 3e-26
Identities = 483/746 (65%), Gaps = 21/746 (3%)
Strand=Plus/Minus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
||||| || || | |||||||| || ||||| | ||||| |||| || ||||| |
Sbjct 13374 TCGAAAAAGTTCGTCTTGCCCTGAAGCGAGATCATGTCCATCCAGTCAAATGGGTTCTTT 13315
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGC-TACGAAGATGCGGTCTGCCACAAACTCCAG 251681
|||| | | ||| | ||| || | ||| || | |||||| || |||||||| |
Sbjct 13314 GCATGGAAAATCTTCGACACGCCGAGCGAGTAC-AACAGGCGGTCCGCTACAAACTCAAT 13256
Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCAT----ACGACAAGGAATTGCCTCAC 251737
||||| | ||| || | |||||||||||||||| ||| || | | || |||
Sbjct 13255 GTACTGGCACATGAGCGCCGAGTTCATGCCAATCAGCTCAACGGGCAGCGAGTCCCGCAC 13196
Query 251738 AGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAG 251797
| || || | ||| | | ||||| || | || | | || | || |
Sbjct 13195 A----AACTCGTGCTCGATCGTCACTGCGTCGCGAATGATCGTGTGGACGCGGTCCTCGG 13140
Query 251798 ACAGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAACTGTTGGTGCAGACCCTCG 251856
|||||||||| | ||||| ||||||| ||| | ||| ||| | ||||| |||||
Sbjct 13139 GCAGCTTGTTCACTAGCTTGGAGTACATGAGGCACGC-AAAGTCCGTGTGCATGCCCTCA 13081
Query 251857 TCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916
|| ||||| |||| |||||| || | | ||||||||||| | || || ||| | |||
Sbjct 13080 TCTCGACTAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGACCGCGCTTCTTCAGC 13021
Query 251917 CAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACA 251976
|| ||||| | ||| || || || ||||| | | || ||||| | | |||| |
Sbjct 13020 CAAAAGATCGAGCAGAACGAGCCCGAGAAGAAAATGCCTTCGACCGAGGCAAATGCCAGC 12961
Query 251977 AGGCGCTCAGCAAACG-----ACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCT 252031
|| ||||| || ||| |||||| || | |||| | ||||| || |
Sbjct 12960 AGCCGCTCCGCGTACGAAGATACTTGTGGGTCG--CACCACTTGAGCGCCCAATTGGCTT 12903
Query 252032 TCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCC-GCTCGGCATCG 252090
|||||| ||| ||||| || || || || | ||| | | ||| ||| | |
Sbjct 12902 TCTTTCGAACACACGGGATGGTCTCAATCGC-GCGCAGAAGGTGATCCTTCTCCGTCGCC 12844
Query 252091 TCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAAC 252150
|| | ||| || |||| || || || || | ||||| |||||| ||| |
Sbjct 12843 TCTTTAATGTACGTGTCAATGAGCAGCGAATAGACTTCCGAGTGGATGTTTTCAATCGCG 12784
Query 252151 ATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTT 252210
|||||| | |||| || || || || | ||||| || |||||| |
Sbjct 12783 ATCTGGAAGCCATAAAAGCACCGAGCTTCCGGCACTTGCACTTCATTGCTAAAGTTCATG 12724
Query 252211 GCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATG 252270
|| | ||||| |||| |||||||| ||| ||||||||||| | || | ||||||
Sbjct 12723 GCCAGATTCTCGTTCACAATGCCATCACTGGCTGCAAAGAAGGCGAGCACATGCTTGATA 12664
Query 252271 AAGTGACGCTCATCGTCGTTGAGCTT 252296
||||||||||||| ||| |||| ||
Sbjct 12663 AAGTGACGCTCATTGTCCGTGAGGTT 12638
>seq113
Length=57615
Score = 122 bits (134), Expect = 2e-22
Identities = 430/666 (65%), Gaps = 32/666 (5%)
Strand=Plus/Plus
Query 279351 GATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTACC 279410
|| || ||| ||||||| |||||||| || || ||||| | ||| || | ||| | |
Sbjct 47899 GACCTCTGTAACTGTGAGTTCTCGCTTGCTTACGGTGGTATGATCTTGTTGAACAATGCT 47958
Query 279411 CGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAAG 279470
|| ||| | |||||||| |||| || ||||| ||||||||| || ||||||
Sbjct 47959 CGTCTCCGTCTTAAGCGTGGTCACCGTTACGGTCTGTGCGGTCCCAACGGGTGTGGTAAG 48018
Query 279471 AGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTA-ACGCATCTGA 279529
|| || |||||||||||| | |||||||||||||| |||||||| | ||| | ||
Sbjct 48019 TCGACGCTGATGCGCGCCATTTCGAACGGTCAGCTGGAGGGATTTCCAAGCCGCGAC-GA 48077
Query 279530 GGTAAGGACAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCACTGTGTT 279589
| | | ||| |||| ||| |||||| || | | | || |||| ||||| |
Sbjct 48078 GCTGAAGACTGTGTTTGTGGAGCACAACCTGCAGGCTTCGGAAGCGGAGCTGTCTGTGGT 48137
Query 279590 CGACTTCCTAACGTCTGACAATCAGGTTATGGAAATCAGCTCTCCTGAGGAAATC----A 279645
|| ||| | | || | | | | ||| || | | | |||| || |
Sbjct 48138 TGAGTTCATCCTGGTGGATGAGGACCTCAAGGA---CACCCCGCGCAAGGAGGTCGAGGA 48194
Query 279646 TCCAGAAACTGGAGGCCAATGGTTTT----GATGA-AAGAATGCGTAATCTGCCAGTAGG 279700
| | |||| | ||| || ||||| | | | || || || || ||
Sbjct 48195 CACTCTATCTGGTG-----TGGGCTTCACAGATGAGATGCAGGCCCAAGCT----GTCGG 48245
Query 279701 TTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGC 279760
|||| || || |||||||||||||| ||| || |||| || || || | | ||
Sbjct 48246 CACTCTTTCTGGCGGTTGGAAGATGAAATTGGAGCTGGCTCGTGCTATGCTGCGGAAGGC 48305
Query 279761 CGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCT 279820
||| || | ||||| |||||||| || |||||| |||| || ||||| || |||||
Sbjct 48306 TGATATCTTGCTGCTCGATGAGCCGACGAACCACTTGGATGTCAAGAACGTGGCTTGGCT 48365
Query 279821 AGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGG 279880
| | || || || | |||| || || | || |||| || || |||||||||||
Sbjct 48366 GGAGAATTATCTCACTGGCCTGACTAACGTGACCTCGATCATGGTGTCGCACGACTCTGG 48425
Query 279881 CTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGA---GCAAAATCTGAAGCTCTC 279937
||||| || || ||| | ||| |||||||| || || || ||||| |||
Sbjct 48426 TTTCCTCGACAAGGTCTGCACGAACATTATTCACTACGAGACGCGTAAGTTGAAGATCTA 48485
Query 279938 CAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTA 279997
|||| ||||| ||||| ||||||| || || |||||| || |||||
Sbjct 48486 CAAG------GGCAATCTGTCCAAATTCGTGGAGCAGAAGCCAGAGGCGAAGGCGTACTA 48539
Query 279998 TGACCT 280003
|| ||
Sbjct 48540 CGAGCT 48545
Score = 102 bits (112), Expect = 2e-16
Identities = 128/176 (73%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238
|||||||| ||||| |||||||| || | ||||| | || || || ||| || |
Sbjct 48724 GGACCCAACGGTGCCGGTAAGTCGACATTGATCAAGATGCTTACCGGTGAGGTTGAGCCT 48783
Query 280239 ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCT 280298
||| || | |||||||| || |||||| | |||||||| |||||||| |||
Sbjct 48784 ACTTCTGGCCAGATGTGGAAGCACCCTTCCATGCGTTTCGCTTACGTGGCTCAGCATGCT 48843
Query 280299 TTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCG 280354
||||||||||| ||| ||||| || |||| | ||||| ||||| ||||||||
Sbjct 48844 TTCCACCACATTGAGTCGCACCTCGATGAGACTGCAAACCAGTACATCCAGTGGCG 48899
>seq4
Length=112988
Score = 111 bits (122), Expect = 3e-19
Identities = 267/399 (67%), Gaps = 14/399 (4%)
Strand=Plus/Plus
Query 218656 AAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAG 218715
||||| || || || | ||||| |||||||| |||| ||||| ||||| || ||
Sbjct 79938 AAGGTGGCGCAATTAGCAGGTTACGTATCCGAGCACTCTGCGTACCACCACGGCGAACAA 79997
Query 218716 AGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAAC 218775
||| |||||||| || || |||||||| || | ||| || || || ||||| ||
Sbjct 79998 AGTTTGCAGGGTTGTATCGTGAATATGGCACAAGATTTTGTTGGAAGCAATAACATTCAC 80057
Query 218776 TTGCTGCTCCCCAA-CGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTC 218834
| ||| || |||| ||||||||||||| | ||| | |||| || |||||| ||
Sbjct 80058 CTTCTG-TCGCCAATCGGTCAGTTTGGTACGCGTTTGATGGGCGGCAAGGATGCGGCAAG 80116
Query 218835 TGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATC---AGGC 218891
| | | || || || || || ||| || | || ||| || | | | ||| |
Sbjct 80117 TTCTCGTTACATTTTCACCAATTTGGAGCAACTTACCCGCAAGATCTACGATCCTTTAGA 80176
Query 218892 CGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGGTA 218951
| ||||||||||| |||||| | || || || ||| ||||| ||||| ||||||||
Sbjct 80177 CAATGATGTGCTC---AAGTATTTGGATGAAGACGGTCAATCGATCGAGCCGGAGTGGTA 80233
Query 218952 TGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAG---GGTT 219008
| || || || | ||||||| || || | | || || || |||| |||
Sbjct 80234 CATTCCGATCATCCCCATGGTGCTCGTCAACGGCACTGACGGCATTGGAACAGGTTGGTC 80293
Query 219009 CAGTACTGACATTCCTTCTTACAATCCCAAGGACATCAT 219047
|||| ||| |||| | ||||| || ||||||||
Sbjct 80294 CAGTTCTG---TTCCGACGTACAACCCACTAGACATCAT 80329
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027714550697003
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