Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq315 120 6e-22 seq113 120 6e-22 seq5172 111 3e-19 seq1314 105 1e-17 >seq315 Length=59289 Score = 120 bits (132), Expect = 6e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 ||| || || ||||| ||||| | |||| ||| ||||| ||||| || ||||||||||| Sbjct 38259 TTAGTTGCCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTATA 38318 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 || || || | || ||||| | |||||| ||||| || || || | || ||||| Sbjct 38319 GTCACTCAGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTC 38378 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA 68407 || || ||||| |||||||| || ||||| ||| || || || | ||| | | Sbjct 38379 AGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGG 38438 Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||| ||||| || || || || | ||||| ||||| |||||||| Sbjct 38439 CTCCACGTCCAGCGTGATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCAT 38492 >seq113 Length=57615 Score = 120 bits (132), Expect = 6e-22 Identities = 437/676 (65%), Gaps = 36/676 (5%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 |||||||||||||||||||| | ||| || ||||| |||||| |||||||||||| Sbjct 48899 CGCCACTGGATGTACTGGTTTGCAGTCTCATCGAGGTGCGACTCAATGTGGTGGAAAGCA 48840 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| || ||||| || | |||||| || |||||||||| ||| ||| || Sbjct 48839 TGCTGAGCCACGTAAGCGAAACGCATGGAAGGGTGCTTCCACATCTGGCCAGAAGTAGGC 48780 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 | |||| ||||| || | |||||| | || | ||| || ||||| ||||| || | | Sbjct 48779 TCAACCTCACCGGTAAGCATCTTGATCAATGTCGACTTACCGGCACCGTTGGGTCCGAGC 48720 Query 225161 ACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAA--GAT-CTCAGGG 225217 || | || | ||| | | || ||| ||||| ||||| | | | | | Sbjct 48719 ACAGCGAT-----ACGAC-TCGAAA-----GAGCGCACGTCACTGAAATGTTGTTGATCG 48671 Query 225218 CCAGTTTGGT-AAGCAAAGGCCACGCCACGCAGC--TTC---------ATGATGGCACGG 225265 | ||||||| || | || | | | ||| ||| || || | Sbjct 48670 ACGGTTTGGTCGTGCCAGGGTACTGGTATG-AGCATTTCGTCAGTCGAATAATAGGCTTT 48612 Query 225266 TCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCAC---C 225322 ||||| |||| | | ||||| || |||||||||||| ||| |||| | Sbjct 48611 CCCTTGTTCTTAATGTCAGCAAGGAAACCAGGCTCGGGGAACGTGAACT---TCACATTC 48555 Query 225323 GCGTCCTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGG 225382 | || || |||||||| | ||||| || || ||||||| ||||| Sbjct 48554 TCCGACTCAAGCTCGTAGTACGCCTTCGCCTCTGGCTTCTGCTCCACGAATTTGGACAGA 48495 Query 225383 TTTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACT 225442 || || || || | | ||| | ||| |||| |||| ||| || ||| || Sbjct 48494 TTGCCCTTGTAGATCTTCAACTTACGCGTCT---CGTAGTGAATAATGTTCGTGCAGACC 48438 Query 225443 GCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTG 225502 ||| ||||| ||||||||||| ||||| ||||| || | |||||| |||||||| || Sbjct 48437 TTGTCGAGGAAACCAGAGTCGTGCGACACCATGATCGAGGTCACGTTAGTCAGGCCAGTG 48378 Query 225503 AGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGA 225562 || | | ||||| |||||||| |||| |||| |||||| || || || || || Sbjct 48377 AGATAATTCTCCAGCCAAGCCACGTTCTTGACATCCAAGTGGTTCGTCGGCTCATCGAGC 48318 Query 225563 AGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCC 225622 |||| ||| ||||| | || || || || | || || ||||| ||||| || Sbjct 48317 AGCAAGATATCAGCCTTCCGCAGCATAGCACGAGCCAGCTCCAATTTCATCTTCCAACCG 48258 Query 225623 CCGGACAGGGAGCCGA 225638 || || || | ||||| Sbjct 48257 CCAGAAAGAGTGCCGA 48242 Score = 114 bits (126), Expect = 2e-20 Identities = 137/186 (74%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 224449 GTGAGAAATAACTACTACACCGCCGCCGAATGACTCAAGGGCGGATGAAAGCGCGCCAAG 224508 ||||| || | || ||||||||| ||| || || || || | || || ||||| Sbjct 49443 GTGAGTGATCATGACCACACCGCCGTTGAACTCCTTAATAGCCGAAGCCAGAGCACCAAG 49384 Query 224509 CGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACGTGGGGGCACTGCCA 224568 ||| |||||||||||| |||||||||||||||| || | | || ||| ||| | |||| Sbjct 49383 CGAGTCGCGGTCAAGGTAGTTCGTCGGCTCATCGAGCACCAAAATGTGCGGGTTCAGCCA 49324 Query 224569 CAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGAGAGGCCGCGGATCCGCGA 224628 || || || | | ||| | ||||||||||||||| || || || || || || ||||| Sbjct 49323 CATCGCAGCGGCGAGCACGACCTTCACCTTCTGACCACCCGACAGACCACGCATGCGCGA 49264 Query 224629 GTGAGT 224634 ||| || Sbjct 49263 GTGGGT 49258 >seq5172 Length=1594 Score = 111 bits (122), Expect = 3e-19 Identities = 170/240 (71%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 9939 ACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGG 9998 || ||||| || || ||||| || || || || ||||| |||| ||||| | | Sbjct 953 ACACCCGCTTTTTGATACTCAGAGACACGTTTTTCAAAGAAATTGGTTTTGCCTTGTAAT 1012 Query 9999 GAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAGT 10058 ||||| || ||||| ||||||||||| || | ||| | || ||||| | ||| ||| Sbjct 1013 GAAATCAGTTCCATAAAGTCAAAGGGATTTTGAGCGTGATACATTTTGGGCTCACCCAGT 1072 Query 10059 G-CTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCAT 10117 | | || | | ||||||||| || |||||||||||||| |||||||||| | |||||| Sbjct 1073 GTCAGT-AGCAGGCGGTCAGCAACAAACTCGATGTACTGTTTCATCAGGTCAGCGTTCAT 1131 Query 10118 GCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTC 10177 || |||| ||| || | ||| ||| | || |||| ||| | || ||||| || Sbjct 1132 ACCGATCAGGCGTACAGGCAAGGCATCGGTGACAAATTCCTGTTCAATTGCAACCGCGTC 1191 >seq1314 Length=13110 Score = 105 bits (116), Expect = 1e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 ||||||||||| || || ||||| || | || ||||| | ||||| ||||| || || Sbjct 2069 TTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTGCCGGCAAAGATC 2128 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | || ||||| || |||||||||||||| || |||||||| ||| || || Sbjct 2129 AGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGCTTCACATTGTCA 2188 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 ||| |||| | | || || |||| ||||| || || || || | ||||| || || Sbjct 2189 ATGCTGTCGGACGGCTCCACGTCCAGCGTGATCGTCTTGCCTGTCAACGTCTTCACAAAG 2248 Query 68454 ATCTGCATTAT 68464 |||||||| || Sbjct 2249 ATCTGCATGAT 2259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921515457240760