Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq69 215 1e-50 >seq69 Length=63067 Score = 215 bits (238), Expect = 1e-50 Identities = 493/730 (68%), Gaps = 23/730 (3%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || |||||||| || ||| ||| ||||| || || ||||| ||||||| | || | Sbjct 12677 CTCGCCTTCTTTGCAGCCAGTGATGGCATTGTGAACGAGAATCTGGCCATGAACTTTAGC 12736 Query 42483 AAAGAGGTGCA-GTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAA 42541 || || ||||| || | || || || ||||| || ||||||||||| || || || || Sbjct 12737 AATGAAGTGCAAGTGCCG-GAAGCTCGGTGCTTTTATGGCTTCCAGATCGCGATTGAAAA 12795 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC--CGTC 42596 | | ||||| || || || | ||||||| |||||||||| || | || Sbjct 12796 CATCCACTCGGAAGTCTATTCG---CTGCTCATTGACACGTACATTAAAGAGGCGACGGA 12852 Query 42597 GAGCG-TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGA 42655 || | | || ||| | || || ||||| || || || | ||||| || | Sbjct 12853 GAAGGATCACCTTCTGCGC---GCGATTGAGACCATCCCGTGTGTTCGAAAGAAAGCCAA 12909 Query 42656 CTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTT 42715 ||||||||||| ||| ||| | | | ||| || ||| ||||| | || || Sbjct 12910 TTGGGCGCTCAAGTGGTGCGACCCACAAGTATCTTCGTACGCGGAGCGGCTGCTGGCATT 12969 Query 42716 TACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCA 42775 | || | ||||| ||||| |||||||||||| | ||| ||| ||||| ||||| ||| | Sbjct 12970 TGCCTCGGTCGAAGGCATTTTCTTCTCGGGCTCGTTCTGCTCGATCTTTTGGCTGAAGAA 13029 Query 42776 G-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834 | ||| || ||||| || |||| |||||||||||| ||||| || | || ||||| Sbjct 13030 GCGCGGTCTC-ATGCCTGGCCTCAGCTTCTCGAACGAGCTCATTAGTCGAGATGAGGGCA 13088 Query 42835 TGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGG 42894 |||| | ||||||||| |||||| ||| ||| | | || | |||||| | ||| Sbjct 13089 TGCACACGGACTTTGCGTGCCTCATGTACTC---CAAGCTAGTGAACAAGCTGCCCGAGG 13145 Query 42895 AGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGT 42954 | || |||| | ||||| || || ||| ||||||| | ||||| | | | | Sbjct 13146 ACCGCGTCCACACGATCATTCGCGACGCAGTGACGATCGAGCACGAGTTTGTGCGGGACT 13205 Query 42955 CGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACG 43014 |||||||||| ||| | ||||||||| | ||||||||| ||||||| ||| | Sbjct 13206 CGCTGCCCGTTGAGCTGATTGGCATGAACTCGGCGCTCATGTGCCAGTACATTGAGTTTG 13265 Query 43015 TCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCG--CCTCTACAACACGCCGTGCCC 43072 | || |||| || ||| | | | || | | || | | | | | | ||| Sbjct 13266 TAGCGGACCGCCTGTTGTACTCGCTCGGCGT--GTCGAAGATTTTCCATGCAAAGAACCC 13323 Query 43073 CTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 43132 || |||| ||||| | |||||| | |||||||||| ||||||||||||||||| || Sbjct 13324 ATTTGACTGGATGGACATGATCTCGCTTCAGGGCAAGACGAACTTTTTCGAGAAGCGTGT 13383 Query 43133 CGCCGACTAC 43142 | ||| ||| Sbjct 13384 GGGCGAGTAC 13393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944229621240080