Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq69 215 1e-50
>seq69
Length=63067
Score = 215 bits (238), Expect = 1e-50
Identities = 493/730 (68%), Gaps = 23/730 (3%)
Strand=Plus/Plus
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482
|| |||||||| || ||| ||| ||||| || || ||||| ||||||| | || |
Sbjct 12677 CTCGCCTTCTTTGCAGCCAGTGATGGCATTGTGAACGAGAATCTGGCCATGAACTTTAGC 12736
Query 42483 AAAGAGGTGCA-GTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAA 42541
|| || ||||| || | || || || ||||| || ||||||||||| || || || ||
Sbjct 12737 AATGAAGTGCAAGTGCCG-GAAGCTCGGTGCTTTTATGGCTTCCAGATCGCGATTGAAAA 12795
Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC--CGTC 42596
| | ||||| || || || | ||||||| |||||||||| || | ||
Sbjct 12796 CATCCACTCGGAAGTCTATTCG---CTGCTCATTGACACGTACATTAAAGAGGCGACGGA 12852
Query 42597 GAGCG-TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGA 42655
|| | | || ||| | || || ||||| || || || | ||||| || |
Sbjct 12853 GAAGGATCACCTTCTGCGC---GCGATTGAGACCATCCCGTGTGTTCGAAAGAAAGCCAA 12909
Query 42656 CTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTT 42715
||||||||||| ||| ||| | | | ||| || ||| ||||| | || ||
Sbjct 12910 TTGGGCGCTCAAGTGGTGCGACCCACAAGTATCTTCGTACGCGGAGCGGCTGCTGGCATT 12969
Query 42716 TACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCA 42775
| || | ||||| ||||| |||||||||||| | ||| ||| ||||| ||||| ||| |
Sbjct 12970 TGCCTCGGTCGAAGGCATTTTCTTCTCGGGCTCGTTCTGCTCGATCTTTTGGCTGAAGAA 13029
Query 42776 G-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834
| ||| || ||||| || |||| |||||||||||| ||||| || | || |||||
Sbjct 13030 GCGCGGTCTC-ATGCCTGGCCTCAGCTTCTCGAACGAGCTCATTAGTCGAGATGAGGGCA 13088
Query 42835 TGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGG 42894
|||| | ||||||||| |||||| ||| ||| | | || | |||||| | |||
Sbjct 13089 TGCACACGGACTTTGCGTGCCTCATGTACTC---CAAGCTAGTGAACAAGCTGCCCGAGG 13145
Query 42895 AGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGT 42954
| || |||| | ||||| || || ||| ||||||| | ||||| | | | |
Sbjct 13146 ACCGCGTCCACACGATCATTCGCGACGCAGTGACGATCGAGCACGAGTTTGTGCGGGACT 13205
Query 42955 CGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACG 43014
|||||||||| ||| | ||||||||| | ||||||||| ||||||| ||| |
Sbjct 13206 CGCTGCCCGTTGAGCTGATTGGCATGAACTCGGCGCTCATGTGCCAGTACATTGAGTTTG 13265
Query 43015 TCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCG--CCTCTACAACACGCCGTGCCC 43072
| || |||| || ||| | | | || | | || | | | | | | |||
Sbjct 13266 TAGCGGACCGCCTGTTGTACTCGCTCGGCGT--GTCGAAGATTTTCCATGCAAAGAACCC 13323
Query 43073 CTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 43132
|| |||| ||||| | |||||| | |||||||||| ||||||||||||||||| ||
Sbjct 13324 ATTTGACTGGATGGACATGATCTCGCTTCAGGGCAAGACGAACTTTTTCGAGAAGCGTGT 13383
Query 43133 CGCCGACTAC 43142
| ||| |||
Sbjct 13384 GGGCGAGTAC 13393
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944229621240080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |