Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq478 143 2e-29 >seq478 Length=29740 Score = 143 bits (158), Expect = 2e-29 Identities = 410/622 (66%), Gaps = 29/622 (5%) Strand=Plus/Minus Query 20216 TGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAA 20275 ||||||||||| |||||| | | ||| | || || || | | |||| || | Sbjct 15585 TGAATAAACTCGCCGGGTTTCAAACCTGCCACCTGTGCCACTAAGCGCGTTAGCAGCGCG 15526 Query 20276 TAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGA 20335 |||||||| || || || || || || | |||||||| | || | ||| |||| ||| Sbjct 15525 TAGCTGGCGATATTGAATGGGACGCCGAGCCCCATGTCAGCTGAGCGCTGGTACATCTGG 15466 Query 20336 CAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCC 20395 || || | ||||||||||||||| ||||| ||||| |||| ||| || ||||| |||||| Sbjct 15465 CACGACAACTCACCGTCAGCTACGTAAAACTGACAGAACATGTGGCACGGCGGCAGCGCC 15406 Query 20396 ATCAACGACAAG-TCCGCCGGGTTCCACGCACACATAATGATTCTTCTATC--------- 20445 || | ||| || ||||| ||||| || ||| | ||| | | ||| Sbjct 15405 AT-GTCATTAAGATCAGCCGGATTCCAGGCCGACAGCACGATACGGCGATCAGAAGGGTT 15347 Query 20446 -GTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGGTCAAACCCCTGGCCTG 20504 || |||| | || | ||| | || || | | ||||| | || ||||||| Sbjct 15346 TGTCCGGAGT-TTGTGTATCA---CCTCA------GCGAGCTGGTCCACGCCTTGGCCTG 15297 Query 20505 TATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAA 20564 ||||||| |||| | ||| |||| || || || || | |||||||||||| || | Sbjct 15296 TATAGTCGGCATGCATGTCGGTGTACTTTGCACCGAAATGACGCCACTGGAAACCATATA 15237 Query 20565 CAGGTCCCAAATCCCCCTCCCTTCTGTG-CGCCAGGCCGCGCCCGGCCAGGAACTCCCTG 20623 | ||| |||| | ||| ||| | ||| | | ||| | | | ||||| |||| | Sbjct 15236 CTGGT-CCAAGGTCTCCTACCTCCCGTGACTGTAAGCCTCTACTGTCCAGGTACTCACGC 15178 Query 20624 GAGCCATTTTTGTCCCATATCTTGACTCC-TGTTCTTGAAAGCTCCCTGGAGTCAGTACT 20682 || ||||| |||||| || ||| || | || || | | || | || || Sbjct 15177 GATCCATTGCCGTCCCAGATACGGACACCTTTTTGCTGTAGCGTGTGTGCACTC-GTGTC 15119 Query 20683 CCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACACCCGCTTTGTGGT 20742 ||||| | ||||| |||||||| | | || |||||||| ||||| ||||| || || Sbjct 15118 ACCCTTAATGAACCACAGCAGCTCCTCAGCCACACCTCGCCAGAACACGCGCTTCGTCGT 15059 Query 20743 TAGTAAGGGAAA---GTGGTCCCGCAGACTATACCTGGCCTGCATGCCAAATAGAGAGAG 20799 || || ||||| || || || || |||| | | |||| ||||| | || | Sbjct 15058 CAGCAACGGAAACGCGTTGTTCCTCAAACTAAATCGCATCTGCGCTCCAAACACTGACAA 14999 Query 20800 GGTGCCTATGCCGGTGCGGTCG 20821 || || ||||||| |||||| Sbjct 14998 CGTCCCCGTGCCGGTTCGGTCG 14977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441321584203720