Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq478 143 2e-29
>seq478
Length=29740
Score = 143 bits (158), Expect = 2e-29
Identities = 410/622 (66%), Gaps = 29/622 (5%)
Strand=Plus/Minus
Query 20216 TGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAA 20275
||||||||||| |||||| | | ||| | || || || | | |||| || |
Sbjct 15585 TGAATAAACTCGCCGGGTTTCAAACCTGCCACCTGTGCCACTAAGCGCGTTAGCAGCGCG 15526
Query 20276 TAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGA 20335
|||||||| || || || || || || | |||||||| | || | ||| |||| |||
Sbjct 15525 TAGCTGGCGATATTGAATGGGACGCCGAGCCCCATGTCAGCTGAGCGCTGGTACATCTGG 15466
Query 20336 CAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCC 20395
|| || | ||||||||||||||| ||||| ||||| |||| ||| || ||||| ||||||
Sbjct 15465 CACGACAACTCACCGTCAGCTACGTAAAACTGACAGAACATGTGGCACGGCGGCAGCGCC 15406
Query 20396 ATCAACGACAAG-TCCGCCGGGTTCCACGCACACATAATGATTCTTCTATC--------- 20445
|| | ||| || ||||| ||||| || ||| | ||| | | |||
Sbjct 15405 AT-GTCATTAAGATCAGCCGGATTCCAGGCCGACAGCACGATACGGCGATCAGAAGGGTT 15347
Query 20446 -GTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGGTCAAACCCCTGGCCTG 20504
|| |||| | || | ||| | || || | | ||||| | || |||||||
Sbjct 15346 TGTCCGGAGT-TTGTGTATCA---CCTCA------GCGAGCTGGTCCACGCCTTGGCCTG 15297
Query 20505 TATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAA 20564
||||||| |||| | ||| |||| || || || || | |||||||||||| || |
Sbjct 15296 TATAGTCGGCATGCATGTCGGTGTACTTTGCACCGAAATGACGCCACTGGAAACCATATA 15237
Query 20565 CAGGTCCCAAATCCCCCTCCCTTCTGTG-CGCCAGGCCGCGCCCGGCCAGGAACTCCCTG 20623
| ||| |||| | ||| ||| | ||| | | ||| | | | ||||| |||| |
Sbjct 15236 CTGGT-CCAAGGTCTCCTACCTCCCGTGACTGTAAGCCTCTACTGTCCAGGTACTCACGC 15178
Query 20624 GAGCCATTTTTGTCCCATATCTTGACTCC-TGTTCTTGAAAGCTCCCTGGAGTCAGTACT 20682
|| ||||| |||||| || ||| || | || || | | || | || ||
Sbjct 15177 GATCCATTGCCGTCCCAGATACGGACACCTTTTTGCTGTAGCGTGTGTGCACTC-GTGTC 15119
Query 20683 CCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACACCCGCTTTGTGGT 20742
||||| | ||||| |||||||| | | || |||||||| ||||| ||||| || ||
Sbjct 15118 ACCCTTAATGAACCACAGCAGCTCCTCAGCCACACCTCGCCAGAACACGCGCTTCGTCGT 15059
Query 20743 TAGTAAGGGAAA---GTGGTCCCGCAGACTATACCTGGCCTGCATGCCAAATAGAGAGAG 20799
|| || ||||| || || || || |||| | | |||| ||||| | || |
Sbjct 15058 CAGCAACGGAAACGCGTTGTTCCTCAAACTAAATCGCATCTGCGCTCCAAACACTGACAA 14999
Query 20800 GGTGCCTATGCCGGTGCGGTCG 20821
|| || ||||||| ||||||
Sbjct 14998 CGTCCCCGTGCCGGTTCGGTCG 14977
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441321584203720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |