Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq69 129 1e-24 seq113 118 2e-21 seq5172 114 3e-20 seq4 89.7 1e-12 >seq69 Length=63067 Score = 129 bits (142), Expect = 1e-24 Identities = 540/839 (64%), Gaps = 20/839 (2%) Strand=Plus/Plus Query 242897 TGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGGACCACCGAGGAAGTTCCTCTGA 242956 ||||| | ||||| |||||||| | || | || ||||| | ||||| | | || Sbjct 12555 TGTGGCAGATGTACAAGAAGGCGGAAGCTTCGTTCTGGACTGCTGAGGA-GCTAGACTTG 12613 Query 242957 ACGCA-GACGTCGTCGACTGGCGCGAGAAACTCAATGACGACGAACGTCATTTCATCAAA 243015 ||| || || |||||| | ||| |||| ||| | || ||||| || ||||| Sbjct 12614 GTGCACGATCTCAAGGACTGG---GCGAACCTCACGGACAATGAGCGTCACTTTATCAAG 12670 Query 243016 CACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTGATGGAAAATCTGCAGACCAAC 243075 || | || | || || |||| | ||||| ||||||| || |||||| | ||| Sbjct 12671 CATGTGCTCGCCTTCTTTGCAGCCAGTGATGGCATTGTGAACGAGAATCTGGCCATGAAC 12730 Query 243076 TTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATTTTATGCTTACCAAACATTCAAC 243135 ||||| ||||| || || || || ||| ||||||| | ||| | | Sbjct 12731 TTTAGCAATGAAGTGCAAGTGCCGGAAGCTCGGTGCTTTTATGGCTTCCAGATCGCGATT 12790 Query 243136 GAATCTATCCATTCTGAACAATATGCTCTTCTTATCGACGCGCTTATTTCAGATGAACAA 243195 ||| ||||| || ||| ||| | || || || ||| || ||| ||| | | | Sbjct 12791 GAAAACATCCACTCGGAAGTCTATTCGCTGCTCATTGACACGTACATTAAAGAGG--CGA 12848 Query 243196 GAGCGAA--ACGAGCTTTTCGACGCCATCGAAAACATTCCGGCGGTTCATAACAAGGCAA 243253 | ||| | | ||| | ||| || || | ||| ||| |||| || || || | Sbjct 12849 CGGAGAAGGATCACCTTCTGCGCGCGATTGAGACCATCCCGTGTGTTCGAAAGAAAGCCA 12908 Query 243254 AATGGGCTCAGAAGTGGCTAGAACCCG--GTAAAT-CATTTGCTGAGCGTCTCGTCGCCT 243310 | ||||| | |||||| || || ||| | | | || ||||| || | || | Sbjct 12909 ATTGGGCGCTCAAGTGGTGCGACCCACAAGTATCTTCGTACGCGGAGCGGCTGCTGGCAT 12968 Query 243311 GGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGA 243370 | | || ||||| ||| | || || || |||||| | |||||||||||| || Sbjct 12969 TTGCCTCGGTCGAAGGCATTTTCTTCTCGGGCTCGTTCTGCTCGATCTTTTGGCTGAAGA 13028 Query 243371 ACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCC 243430 | ||| | |||||||||||| | | || |||||| |||| ||||| || |||||| Sbjct 13029 AGCGCGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTCATTAGTCGAGATGAGGGCA 13088 Query 243431 TTCACCAACAGTTCG-GTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGA- 243488 | ||| | || | ||| || ||||| || ||||| ||||||||| || ||| Sbjct 13089 TGCACACGGACTTTGCGTGC-CTCATGTACTCCAAGCTAGTGAACAAGCTGCC---CGAG 13144 Query 243489 -AACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGAC 243546 | || ||| | ||||| || ||||| | ||| | || || | | ||| Sbjct 13145 GACCGCGTCCACACGATCATTCGCGACGCAGTGACGATCGAGCACGAGTTTGTGCGGGAC 13204 Query 243547 GCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTC 243606 | | || ||| |||||||||||||| | |||||| | |||||||| || || Sbjct 13205 TCGCTGCCCGTTGAGCTGATTGGCATGAACTCGGCGCTCATGTGCCAGTACATTGAGTTT 13264 Query 243607 GTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCC 243666 ||||| |||||| | || | |||| || ||| | | | | | |||||||| Sbjct 13265 GTAGCGGACCGCCTGTTGTACTCGCTCGGCGTGTCGAAGATTTTCCATGCAAAGAACCCA 13324 Query 243667 TTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGT 243725 |||| || ||||| | || |||||||| || || || ||||| ||||| |||||||| Sbjct 13325 TTTGACTGGATGGACATGATCTCGCTTCAGGGCAAGACGAACTTTTTCGAGAAGCGTGT 13383 >seq113 Length=57615 Score = 118 bits (130), Expect = 2e-21 Identities = 408/634 (64%), Gaps = 23/634 (4%) Strand=Plus/Minus Query 333722 CTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTA 333781 || || |||||| | ||||||||| |||||||| |||||| ||| | | ||||| Sbjct 48516 CTGCTCCACGAATTTGGACAGATTGCCCTTGTAGATCTTCAACTTACGCGTC---TCGTA 48460 Query 333782 ATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCA 333841 || ||||| ||||| || ||||||||| || |||||||| ||||| || | | Sbjct 48459 GTGAATAATGTTCGTGCAGACCTTGTCGAGGAAACCAGAGTCGTGCGACACCATGATCGA 48400 Query 333842 CGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAG 333901 | |||| | ||| | || || | |||||| |||||| ||| | Sbjct 48399 GGTCACGTTAGTCAGGCCAGTGAGATAATTCTCCAGCCAAGCCACGTTCTTGACATCCAA 48340 Query 333902 ATGGTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAG 333961 ||||| |||||||| || || || | | | || ||| | ||||| ||||| || || Sbjct 48339 GTGGTTCGTCGGCTCATCGAGCAGCAAGATATCAGCCTTCCGCAGCATAGCACGAGCCAG 48280 Query 333962 AGCGAGTTTCATTTTCCACCCTCCTGAAAGAGTGTTAATTGGGGCAGATTGGCGCTCAAT 334021 | | |||||| ||||| || || ||||||||| | ||| |||| || || Sbjct 48279 CTCCAATTTCATCTTCCAACCGCCAGAAAGAGTGCCGA------CAGCTTGGGCCTGCAT 48226 Query 334022 ATCA------AAGCCAACCGATTCTAGAGTAGTTACGATCTTTTCACGAGACCAAATGTT 334075 ||| ||||| || |||||| ||| || | || | | | Sbjct 48225 CTCATCTGTGAAGCCCACACCAGATAGAGTGTCCTCGACCTCCTTGCGCGG------GGT 48172 Query 334076 TTCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCATGTTAGAATCGGACCC 334135 ||||| | | ||||| ||||| |||| | || || | | || || | Sbjct 48171 GTCCTTGAGGTCCTCATCCACCAGGATGAACTCAACCACAGACAGCTCCGCTTCCGAAGC 48112 Query 334136 GTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAAC-CCTTCAA 334194 | || | ||| ||||| | |||| |||| | || || | |||| || || | Sbjct 48111 CTGCAGGTTGTGCTCCACAAACACAGTCTTCAGCTCGTC-GCGGCTTGGAAATCCCTCCA 48053 Query 334195 GCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACA 334254 ||||||||||| ||| ||||||||||| || || ||||| |||||| || || |||| Sbjct 48052 GCTGACCGTTCGAAATGGCGCGCATCAGCGTCGACTTACCACACCCGTTGGGACCGCACA 47993 Query 334255 GACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCCAC 334314 ||||||| |||| |||||||| ||| || || | |||||||| | || | |||| Sbjct 47992 GACCGTAACGGTGACCACGCTTAAGACGGAGACGAGCATTGTTCAACAAGATCATACCAC 47933 Query 334315 CATATGCCAGAGAAAATTCACAATCACACAGATC 334348 | || || || || || ||||| | ||| || || Sbjct 47932 CGTAAGCAAGCGAGAACTCACAGTTACAGAGGTC 47899 Score = 96.9 bits (106), Expect = 8e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||||||||| || ||||||| ||||| |||||||| | ||| || || Sbjct 48924 CTCCTTGTCTTCACCAGACTGGAAACGCCACTGGATGTACTGGTTTGCAGTCTCATCGAG 48865 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || ||| |||||||||||||||||||| ||||||||||| | |||||| || || Sbjct 48864 GTGCGACTCAATGTGGTGGAAAGCATGCTGAGCCACGTAAGCGAAACGCATGGAAGGGTG 48805 Query 333434 CTTCCA 333439 |||||| Sbjct 48804 CTTCCA 48799 >seq5172 Length=1594 Score = 114 bits (126), Expect = 3e-20 Identities = 300/454 (66%), Gaps = 8/454 (2%) Strand=Plus/Minus Query 243289 TTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 243348 ||||||||||| || ||||||| | | ||||||| ||| | ||||| || || ||| Sbjct 1413 TTTGCTGAGCGCCTTGTCGCCTTTGCCGCCATTGAAGGCATTTTCTTTTCTGGTAGCTTC 1354 Query 243349 TGCGCCATCTTTTGGCTGCGGAACAAAGGTG---TGATGCCTGGCCTCGGTCTGTCTAAC 243405 ||| |||| || ||||| || || ||| ||||||| ||| | || | || || Sbjct 1353 TGCTCCATTTTCTGGCTT---AAAAAGCGTGGCCTGATGCCGGGCTTGAGTTTTTCAAAT 1297 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTA-TGTATTCAAA 243464 || | ||| |||||| || ||| | || | |||| |||| |||| | Sbjct 1296 GAACTGATCTCTCGCGATGAAGGCATGCATACTGACTTCGCCT-GCTTGCTGTACCAGCA 1238 Query 243465 GCTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAA 243524 ||| || ||||| || ||| | | || || | || || |||| || Sbjct 1237 GCTTTTAAATAAGCTCCCGGCTGAACGCCTGCGTGAGATTATTGCCGACGCGGTTGCAAT 1178 Query 243525 CGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACT 243584 ||| ||||||| | ||| || | || || || || || |||||| |||| || Sbjct 1177 TGAACAGGAATTTGTCACCGATGCCTTGCCTGTACGCCTGATCGGTATGAACGCTGACCT 1118 Query 243585 CATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAA 243644 ||| |||||||||||| || || || |||||| | | | | || ||| | || Sbjct 1117 GATGAAACAGTACATCGAGTTTGTTGCTGACCGCCTGCTACTGACACTGGGTGAGCCCAA 1058 Query 243645 AGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAAC 243704 | |||| || | | || ||||||| ||||||||| || ||||| | ||||| ||||| Sbjct 1057 AATGTATCACGCTCAAAATCCCTTTGACTTTATGGAACTGATTTCATTACAAGGCAAAAC 998 Query 243705 TAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 || ||||| ||||| |||||| ||| |||||| Sbjct 997 CAATTTCTTTGAAAAACGTGTCTCTGAGTATCAA 964 >seq4 Length=112988 Score = 89.7 bits (98), Expect = 1e-12 Identities = 256/391 (65%), Gaps = 2/391 (1%) Strand=Plus/Minus Query 297244 GATGTCTTTTGGATTGTAACTAGGGATATTAGTCGACCAACCGGTACCGATTCCACTCGA 297303 ||||||| ||| ||||| | || | | | | |||||||| || || || || | Sbjct 80327 GATGTCTAGTGGGTTGTACGTCGGAACAGAACTGGACCAACCTGTTCCAATGCCGTCAGT 80268 Query 297304 ACCATTCACCAGAATGCTCGGAATAACAGGCACATAATACTCTGGTTCGATCTTGTCACC 297363 || || || || | | || || | || | || |||| || |||||| | ||| Sbjct 80267 GCCGTTGACGAGCACCATGGGGATGATCGGAATGTACCACTCCGGCTCGATCGATTGACC 80208 Query 297364 GTCATCATACAGATATTTCAGAAGATTATCGTCCGTATCGACGAAAACCTGTCGAGTCTG 297423 ||| |||| || ||| || || | || || ||| | || | | || || || | Sbjct 80207 GTCTTCATCCAAATACTTGAGCACATCATTGTCTAAAGGATCGTAGATCTTGCGGGTAAG 80148 Query 297424 AGGGTTCAGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCT 297483 | | || || |||||||| || || | ||| || |||||| || ||| ||| | Sbjct 80147 TTGCTCCAAATTGGTGAAAATGTAACGAGAACTTGCCGCATCCTTGCCGCCCATCAAACG 80088 Query 297484 CGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTG 297543 || ||| ||||| || ||| ||| || |||||||||||||| ||| |||| || Sbjct 80087 CGTACCAAACTGACCGATTGGCGACAGAAGGTGAATGTTATTGCTTCCAACAAAATCTTG 80028 Query 297544 TGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTC 297603 ||| | |||||||| || |||| | | |||||| ||||| || || ||||| Sbjct 80027 TGCCATATTCACGATACAACCCTGCAAACTTTGTTCGCCGTGGTGGTACGCAGAGTGCTC 79968 Query 297604 TGCAACGTAACC-GCTGAACTGTGCAACCTT 297633 | |||||||| ||| || || || ||||| Sbjct 79967 GGATACGTAACCTGCT-AATTGCGCCACCTT 79938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102748825176050