Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_010106.1
Length=52975
Score E
Sequences producing significant alignments: (Bits) Value
seq3915 313 8e-81
>seq3915
Length=2367
Score = 313 bits (346), Expect = 8e-81
Identities = 740/1100 (67%), Gaps = 37/1100 (3%)
Strand=Plus/Minus
Query 51857 ATGGCTTACACTACCTTTTCACAAACCAAGAATAACCAATTACTAGAGCCAATGTTCTTT 51916
||||| |||| | |||| | ||||| | || ||||| | ||| || ||||||||
Sbjct 1089 ATGGCCTACAGCATCTTTACTAAAACCGACAACGACCAACTCAAAGAACCCATGTTCTTC 1030
Query 51917 GGTCAGAACGTTAACGTTGCTCGATATGACCAACAGAAGTA--CGGCATATTCGAGAAGT 51974
|| ||| ||| || || || || |||||||||||||| || ||| | |||||||||
Sbjct 1029 GGCCAGCCCGTCAATGTGGCGCGGTATGACCAACAGAAATATCCGG--TGTTCGAGAAGC 972
Query 51975 TAATTGAGAAACAATTGTCATTCTTCTGGCGACCGGAAGAGGTAGACGTTTCCCAGGACC 52034
| || ||||||||| | || ||||||||||| || ||||| || || || || || ||||
Sbjct 971 TGATCGAGAAACAACTCTCCTTCTTCTGGCGTCCAGAAGAAGTCGATGTGTCGCAAGACC 912
Query 52035 GTATTGATTATCAGAAGCTACCTGCAAACGAACAACACATTTTCACCAGTAATCTTCGTT 52094
| ||| ||||| || || | | ||| | || ||||||| ||| || || |
Sbjct 911 GCGCTGACTATCAAGGCCTGCCCGAGCATGAAAAGCATATTTTCATCAGCAACCTGAAGT 852
Query 52095 ATCAGATTCTTCTTGACTCAATTCAGGGACGTGGGCCCAACACAGTTTTGCTTCCAATCG 52154
|||||| || || || || || ||||| ||| | || ||| | ||| | || | |
Sbjct 851 ATCAGACGCTGCTGGATTCCATCCAGGGCCGTAGCCCTAACGTGGCCTTGTTGCCGCTGG 792
Query 52155 TGAGCATT-CCTGAATTGGAGACGTGGATTGAAACCTGGTCTTTCTCCGAGACTATTCAT 52213
|| |||| || || |||| || ||||| || |||||| | || |||||||| || ||
Sbjct 791 TGT-CATTGCCCGAGCTGGAAACCTGGATCGAGACCTGGGCGTTTTCCGAGACCATACAC 733
Query 52214 TCACGTTCTTATACCCACATCATTCGTAATATTGTTACAGACCCAAGCATTATCTTTGAT 52273
|| || || || ||||||||||| || ||||| || | ||||| | || ||||||
Sbjct 732 TCGCGCTCATACACCCACATCATCCGCAATATCGTCAATGACCCTTCTGTCATGTTTGAT 673
Query 52274 GAAATCGTAACTAACGAACACATCAAGGCACGAGCAATTGGCATCTCCCAATATTATGAC 52333
|| ||||| || ||| |||||| || || || | | ||| |||| ||||| ||
Sbjct 672 GACATCGTGCGCAATGAAAACATCACCGCGCGTGCGACAGATATCGCCCATTATTACGAT 613
Query 52334 GAAC---TCCAGCAACTCACTGCATTA-TGGCAGTTGTTCGGAGAAGGGAGCCATGCTGG 52389
|| | ||||||| || || || | ||| || || || || | |||| |
Sbjct 612 GAGCTGATCCAGCAGACCA-TGTTGTATTCGCAACTG---GGTGAGGGCAATCATG-TCA 558
Query 52390 TC-ATG--------AAATTAGTC----TGCGTGAGTTGAAGAAGAAGCTGTATTTATGCC 52436
|| ||| ||| | ||| ||||| | |||| ||| ||| || ||||
Sbjct 557 TCAATGGCGAGACCAAAGTGGTCAACAAGCGTGCGCTGAAAAAGCTGCTCTACCGCTGCC 498
Query 52437 TCATGTCTATCAATGCATTGGAAGCAATTCGCTTCTATGTCAGCTTTGCTTGCTCATTTG 52496
| ||| ||||| | ||||| || ||||| || ||||||||||| ||||| || |
Sbjct 497 TGATGAACGTCAATATCCTCGAAGCCATCCGCTTTTACGTCAGCTTTGCCTGCTCGTTCG 438
Query 52497 CCTTCGCAGAACGTAAGTTAATGGAAGGAAATGCCAAGATTATTCGCTTAATTGCACGAG 52556
| || || || || ||| | |||||||| ||||||||||| || ||| | ||||| || |
Sbjct 437 CGTTTGCCGAGCGCAAGGTGATGGAAGGCAATGCCAAGATCATCCGCCTCATTGCGCGTG 378
Query 52557 ATGAAGCACTTCATTTGACAGGAACTCAGCACATGCTGAACCTTCTTGC-AAGTGGAAAA 52615
| ||||| || || | || || || |||||||||||||| || ||| || |
Sbjct 377 ACGAAGCCCTGCACCTCACCGGCACCCAGCACATGCTGAA-TATCATGCGCTCCGGCCAG 319
Query 52616 GATGACCCAGAAATGGGTGAAATTGCTGCTGAATGCCGC-CA-AGAATGCCAGAAATTGT 52673
|| || | || | | || || || ||||| || || || || ||| | |||
Sbjct 318 GACGATGCCGAGTTCGCCGAGATCGCCGCTGA--GCTGCACACTGAGTGCTTTGAGATGT 261
Query 52674 TCGAAGATGCTGCTCAACAAGAGAAGGATTGGGCCGATTATTTGTTCAAAGATGGCTCTA 52733
|| || || || | || ||||| | ||||| || || |||| ||||||||||| |
Sbjct 260 TCAAAAGCGCCGCCGAGCAGGAGAAAAAATGGGCAGAATACCTGTTTAAAGATGGCTCCA 201
Query 52734 TGATTGGCTTAAACAAGCAAATTCTATGCGGATATGTGGAATATATCACGAATATTCGTA 52793
|||| ||||| |||||| | || || ||| || |||||||| ||||| || | ||||
Sbjct 200 TGATAGGCTTGAACAAGGATATCCTGTGCCAGTACGTGGAATACATCACCAACACCCGTA 141
Query 52794 TGCAAGCAGTTGGATTAGATGCTCCATT---CAAAGGTGCAACTAACCCGATTCCGTGGA 52850
|| | || || || | |||| ||| | || ||||||||||| ||||
Sbjct 140 TGGCCTCGGTCGGCTTGCCACCGGCATTCCCCAATGCCAAAAACAACCCGATTCCATGGA 81
Query 52851 TTAATGCATGGTTGAATTCGGATGCTGTACAGGTTGCTCCACAGGAAACGGAGATTAGTT 52910
| || | ||| || || ||| | ||||| || || || || || || | || |
Sbjct 80 TCAACACCTGGCTGGCCTCCGATACCGTACAAGTGGCGCCGCAAGAGGTCGAACTCAGCT 21
Query 52911 CCTACCTGGTCGGGCAAATT 52930
| |||||| | || || |||
Sbjct 20 CTTACCTGATTGGTCAGATT 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 169379726261502
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |