Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_010106.1 Length=52975 Score E Sequences producing significant alignments: (Bits) Value seq3915 313 8e-81 >seq3915 Length=2367 Score = 313 bits (346), Expect = 8e-81 Identities = 740/1100 (67%), Gaps = 37/1100 (3%) Strand=Plus/Minus Query 51857 ATGGCTTACACTACCTTTTCACAAACCAAGAATAACCAATTACTAGAGCCAATGTTCTTT 51916 ||||| |||| | |||| | ||||| | || ||||| | ||| || |||||||| Sbjct 1089 ATGGCCTACAGCATCTTTACTAAAACCGACAACGACCAACTCAAAGAACCCATGTTCTTC 1030 Query 51917 GGTCAGAACGTTAACGTTGCTCGATATGACCAACAGAAGTA--CGGCATATTCGAGAAGT 51974 || ||| ||| || || || || |||||||||||||| || ||| | ||||||||| Sbjct 1029 GGCCAGCCCGTCAATGTGGCGCGGTATGACCAACAGAAATATCCGG--TGTTCGAGAAGC 972 Query 51975 TAATTGAGAAACAATTGTCATTCTTCTGGCGACCGGAAGAGGTAGACGTTTCCCAGGACC 52034 | || ||||||||| | || ||||||||||| || ||||| || || || || || |||| Sbjct 971 TGATCGAGAAACAACTCTCCTTCTTCTGGCGTCCAGAAGAAGTCGATGTGTCGCAAGACC 912 Query 52035 GTATTGATTATCAGAAGCTACCTGCAAACGAACAACACATTTTCACCAGTAATCTTCGTT 52094 | ||| ||||| || || | | ||| | || ||||||| ||| || || | Sbjct 911 GCGCTGACTATCAAGGCCTGCCCGAGCATGAAAAGCATATTTTCATCAGCAACCTGAAGT 852 Query 52095 ATCAGATTCTTCTTGACTCAATTCAGGGACGTGGGCCCAACACAGTTTTGCTTCCAATCG 52154 |||||| || || || || || ||||| ||| | || ||| | ||| | || | | Sbjct 851 ATCAGACGCTGCTGGATTCCATCCAGGGCCGTAGCCCTAACGTGGCCTTGTTGCCGCTGG 792 Query 52155 TGAGCATT-CCTGAATTGGAGACGTGGATTGAAACCTGGTCTTTCTCCGAGACTATTCAT 52213 || |||| || || |||| || ||||| || |||||| | || |||||||| || || Sbjct 791 TGT-CATTGCCCGAGCTGGAAACCTGGATCGAGACCTGGGCGTTTTCCGAGACCATACAC 733 Query 52214 TCACGTTCTTATACCCACATCATTCGTAATATTGTTACAGACCCAAGCATTATCTTTGAT 52273 || || || || ||||||||||| || ||||| || | ||||| | || |||||| Sbjct 732 TCGCGCTCATACACCCACATCATCCGCAATATCGTCAATGACCCTTCTGTCATGTTTGAT 673 Query 52274 GAAATCGTAACTAACGAACACATCAAGGCACGAGCAATTGGCATCTCCCAATATTATGAC 52333 || ||||| || ||| |||||| || || || | | ||| |||| ||||| || Sbjct 672 GACATCGTGCGCAATGAAAACATCACCGCGCGTGCGACAGATATCGCCCATTATTACGAT 613 Query 52334 GAAC---TCCAGCAACTCACTGCATTA-TGGCAGTTGTTCGGAGAAGGGAGCCATGCTGG 52389 || | ||||||| || || || | ||| || || || || | |||| | Sbjct 612 GAGCTGATCCAGCAGACCA-TGTTGTATTCGCAACTG---GGTGAGGGCAATCATG-TCA 558 Query 52390 TC-ATG--------AAATTAGTC----TGCGTGAGTTGAAGAAGAAGCTGTATTTATGCC 52436 || ||| ||| | ||| ||||| | |||| ||| ||| || |||| Sbjct 557 TCAATGGCGAGACCAAAGTGGTCAACAAGCGTGCGCTGAAAAAGCTGCTCTACCGCTGCC 498 Query 52437 TCATGTCTATCAATGCATTGGAAGCAATTCGCTTCTATGTCAGCTTTGCTTGCTCATTTG 52496 | ||| ||||| | ||||| || ||||| || ||||||||||| ||||| || | Sbjct 497 TGATGAACGTCAATATCCTCGAAGCCATCCGCTTTTACGTCAGCTTTGCCTGCTCGTTCG 438 Query 52497 CCTTCGCAGAACGTAAGTTAATGGAAGGAAATGCCAAGATTATTCGCTTAATTGCACGAG 52556 | || || || || ||| | |||||||| ||||||||||| || ||| | ||||| || | Sbjct 437 CGTTTGCCGAGCGCAAGGTGATGGAAGGCAATGCCAAGATCATCCGCCTCATTGCGCGTG 378 Query 52557 ATGAAGCACTTCATTTGACAGGAACTCAGCACATGCTGAACCTTCTTGC-AAGTGGAAAA 52615 | ||||| || || | || || || |||||||||||||| || ||| || | Sbjct 377 ACGAAGCCCTGCACCTCACCGGCACCCAGCACATGCTGAA-TATCATGCGCTCCGGCCAG 319 Query 52616 GATGACCCAGAAATGGGTGAAATTGCTGCTGAATGCCGC-CA-AGAATGCCAGAAATTGT 52673 || || | || | | || || || ||||| || || || || ||| | ||| Sbjct 318 GACGATGCCGAGTTCGCCGAGATCGCCGCTGA--GCTGCACACTGAGTGCTTTGAGATGT 261 Query 52674 TCGAAGATGCTGCTCAACAAGAGAAGGATTGGGCCGATTATTTGTTCAAAGATGGCTCTA 52733 || || || || | || ||||| | ||||| || || |||| ||||||||||| | Sbjct 260 TCAAAAGCGCCGCCGAGCAGGAGAAAAAATGGGCAGAATACCTGTTTAAAGATGGCTCCA 201 Query 52734 TGATTGGCTTAAACAAGCAAATTCTATGCGGATATGTGGAATATATCACGAATATTCGTA 52793 |||| ||||| |||||| | || || ||| || |||||||| ||||| || | |||| Sbjct 200 TGATAGGCTTGAACAAGGATATCCTGTGCCAGTACGTGGAATACATCACCAACACCCGTA 141 Query 52794 TGCAAGCAGTTGGATTAGATGCTCCATT---CAAAGGTGCAACTAACCCGATTCCGTGGA 52850 || | || || || | |||| ||| | || ||||||||||| |||| Sbjct 140 TGGCCTCGGTCGGCTTGCCACCGGCATTCCCCAATGCCAAAAACAACCCGATTCCATGGA 81 Query 52851 TTAATGCATGGTTGAATTCGGATGCTGTACAGGTTGCTCCACAGGAAACGGAGATTAGTT 52910 | || | ||| || || ||| | ||||| || || || || || || | || | Sbjct 80 TCAACACCTGGCTGGCCTCCGATACCGTACAAGTGGCGCCGCAAGAGGTCGAACTCAGCT 21 Query 52911 CCTACCTGGTCGGGCAAATT 52930 | |||||| | || || ||| Sbjct 20 CTTACCTGATTGGTCAGATT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169379726261502