Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq315 91.5 2e-13
seq1314 89.7 6e-13
>seq315
Length=59289
Score = 91.5 bits (100), Expect = 2e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058
||||| |||| || |||||| || || || || ||| ||| || || |||| ||
Sbjct 38283 CACCAGGTGCAGCGTCGACTCCTTCTGGATGTTATAGTCACTCAGCGTACGGCCGTCTTC 38342
Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118
|||||||| || || || || || ||||||||||| | || | || ||||||||||
Sbjct 38343 CAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 38402
Query 42119 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178
||| || || || | | | | || ||| || ||||| || | |||||| || ||
Sbjct 38403 GATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTCTT 38462
Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || | |||||| || || || |||||
Sbjct 38463 CCCTGTCAACGTCTTCACGAAAATCTGCAT 38492
Score = 89.7 bits (98), Expect = 6e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||| || || ||||| || ||| || || |||| || |||||||| || || ||
Sbjct 38605 TCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCAAAG 38664
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137
|| || ||||||||||| | || | || |||||||||| ||| || || || | |
Sbjct 38665 ATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTG 38724
Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197
| | || ||| || ||||| || | |||||| || || || || | |||||| ||
Sbjct 38725 TCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTCTTCCCTGTCAACGTCTTCACG 38784
Query 42198 AAGATTTGCATTTT 42211
|| || ||||| ||
Sbjct 38785 AAAATCTGCATCTT 38798
>seq1314
Length=13110
Score = 89.7 bits (98), Expect = 6e-13
Identities = 136/191 (71%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078
||||||| || ||||| || | || || || |||| || || ||||| || || || |
Sbjct 2067 CCTTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTGCCGGCAAAGA 2126
Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138
| || ||||||||||| | || | || ||||| ||| || || || || | | | |
Sbjct 2127 TCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGCTTCA-CATTG 2185
Query 42139 CCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197
|| | ||||| || ||||| || | |||||| || ||||| || | |||||| |||
Sbjct 2186 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATCGTCTTGCCTGTCAACGTCTTCACA 2245
Query 42198 AAGATTTGCAT 42208
||||| |||||
Sbjct 2246 AAGATCTGCAT 2256
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543149766944720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |