Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq315 131 2e-25 seq1314 116 4e-21 seq479 89.7 5e-13 >seq315 Length=59289 Score = 131 bits (144), Expect = 2e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | |||||| || || | ||||||||| || || |||||||| || Sbjct 38569 CCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCGCTC 38628 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || ||||||| ||||||||||||||| | || |||||||||||||| || || Sbjct 38629 AGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGG 38688 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCA-CCGGCGTCCAC 64395 || || || || || || || || ||||| ||| || | | ||| |||| ||||| Sbjct 38689 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGC-TCCAC 38747 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | ||||| || ||||| || || |||||||| ||||| || Sbjct 38748 GTCCAGCGTGATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCATCTT 38798 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | |||||| || || | |||||| || || || ||||| || || Sbjct 38266 CCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTATAGTCACTC 38325 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || ||||||| ||||||||||||||| | || |||||||||||||| || || Sbjct 38326 AGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGG 38385 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCA-CCGGCGTCCAC 64395 || || || || || || || || ||||| ||| || | | ||| |||| ||||| Sbjct 38386 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGC-TCCAC 38444 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| || ||||| || || |||||||| ||||| Sbjct 38445 GTCCAGCGTGATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCAT 38492 >seq1314 Length=13110 Score = 116 bits (128), Expect = 4e-21 Identities = 142/190 (75%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 ||||| |||||||| || | || ||||| ||||||| || |||||||||||| | || Sbjct 2069 TTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTGCCGGCAAAGATC 2128 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 || ||||||||||| |||||||| ||||| || || || || || ||||| ||| || Sbjct 2129 AGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGCTTCACATTGTCA 2188 Query 64376 A--CTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGA 64433 | |||| | |||| ||||| || | || | |||||||| ||||| || || || | Sbjct 2189 ATGCTGTCGGA-CGGC-TCCACGTCCAGCGTGATCGTCTTGCCTGTCAACGTCTTCACAA 2246 Query 64434 AAATTTGCAT 64443 | || ||||| Sbjct 2247 AGATCTGCAT 2256 >seq479 Length=33999 Score = 89.7 bits (98), Expect = 5e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| |||| | |||||| || || | |||||| || || || |||||||| || | Sbjct 31132 ACCGCCACGCAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 31191 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | || || ||||||||||| || | ||||| ||||||||||| || || Sbjct 31192 CAGAGTACGACCATCCTCTAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGCGG 31251 Query 64336 AATTCCT 64342 ||||||| Sbjct 31252 AATTCCT 31258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499586822466520