Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_010811.2 Length=231255 Score E Sequences producing significant alignments: (Bits) Value seq2498 116 5e-21 seq5988 86.0 9e-12 >seq2498 Length=5458 Score = 116 bits (128), Expect = 5e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 186301 TGGAGCGGGCGACGAGACTCGAACTCGCGACATCTTGCTTGGAAGGCAAGAACTCTACCA 186360 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 5179 TGGAGCGGGCGACGAGGTTCGAACTCGCGACATCTTGCTTGGAAGGCAAGTGCTCTACCA 5120 Query 186361 ACTGAGCTACGCCCGCA 186377 |||||||||| |||||| Sbjct 5119 ACTGAGCTACACCCGCA 5103 >seq5988 Length=1363 Score = 86.0 bits (94), Expect = 9e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 186529 TGGTCCGAGTGAGAGGATTCGAACCTCCGACCCCCTGATCCCAAATCAGGTGCGCTAACC 186588 ||||| | |||| ||||||||||||| |||||| ||| ||||||| ||| |||||| ||| Sbjct 1348 TGGTCGGTGTGAAAGGATTCGAACCTTCGACCCTCTGGTCCCAAACCAGATGCGCT-ACC 1290 Query 186589 AGACTGCGCTACAC 186602 ||||||||||| || Sbjct 1289 AGACTGCGCTATAC 1276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739802145246200