Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq1434 114 6e-21 seq317 93.3 2e-14 >seq1434 Length=11778 Score = 114 bits (126), Expect = 6e-21 Identities = 355/547 (65%), Gaps = 7/547 (1%) Strand=Plus/Plus Query 66063 GCCGCCTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTG 66122 ||||| | ||||| || || ||| | | ||||| | || || ||| ||| || ||| Sbjct 10921 GCCGCATTTATCGATGCGGAGCATGCCTTGGACCCGCAATATGCTGCGAAGCTGGGTGTG 10980 Query 66123 GATGTCGACAATCTCGTGGTTGTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTT 66182 |||| | | | || || ||||| |||||||||||||| ||||||||||| | Sbjct 10981 AATGTTCCCGAGTTATTGATTTCACAGCCTGACACTGGCGAGCAAGCCCTGGAGATTGCC 11040 Query 66183 GACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTG 66242 || | || || |||||| || ||| | || || ||||| || || ||| || Sbjct 11041 GATATGCTGGTGCGCTCTGGCTCCGTGGATATCGTGGTGGTTGACTCCGTTGCCGCCTTG 11100 Query 66243 GTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGC 66302 || || || || ||||||| || || || || ||| | || |||| || || Sbjct 11101 ACTCCACGTGCCGAAATCGAAGGCGAAATGGGTGATAGCCACATGGGTTTGCAAGCGCGG 11160 Query 66303 CTGATGTCTCAGGCCATGCGCAAGCTGACCGGCACGATTGCCAGC--ACCAACACGCTCA 66360 ||||||| || ||| ||||||| || || || | || | ||| ||||| || || Sbjct 11161 TTGATGTCACAAGCCCTGCGCAAACTTACGGGTAACAT--CAAGCGTACCAATACCCTGG 11218 Query 66361 CCCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGCAACGTGGGCTACGGCCCGAATGAGA 66420 | | | || ||| | || ||| |||||| | || | |||| ||| | Sbjct 11219 TGATCTTCATTAACCAGATCCGTATGAAAATCGGCGTCATG---TTCGGCAATCCTGAAA 11275 Query 66421 CCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGA 66480 ||||||| || ||||| || ||| || ||| |||| || || ||||| ||||| | | Sbjct 11276 CCACCACAGGCGGTAACGCACTGAAGTTTTACTCCTCTGTACGCTTGGATATCCGCCGCA 11335 Query 66481 TCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCA 66540 | | || || |||| ||||||| | ||| || || || || ||| Sbjct 11336 CGGGCGCCATCAAAAAAGGTGATGAGGTGATTGGCTCTGAAACCAAAGTCAAAGTCATCA 11395 Query 66541 AGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGCA 66600 | |||||| ||||||| || | ||||||||||| ||| | ||||| ||||||| Sbjct 11396 AAAACAAGGTGGCGCCACCCTTCAAACAGGCTGAGTTCGACATAATGTACGGTGAGGGCA 11455 Query 66601 TTTCCCG 66607 | || || Sbjct 11456 TCTCGCG 11462 >seq317 Length=46315 Score = 93.3 bits (102), Expect = 2e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 66146 GCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGA 66205 |||||| ||| |||| || | || |||||||||| |||| || ||| ||| || | Sbjct 31058 GCAGCCCGACTCTGGAGAAGAAGCGCTGGAGATCGCTGACACACTGATCAGGTCGGGAGC 30999 Query 66206 GGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGG 66265 || | | |||| | ||| ||| || ||||| ||||| || || ||||| ||||| Sbjct 30998 AGTCGACCTTGTCGTGCTAGACAGTGTAGCTGCCCTCGTGCCCCGAGCAGAGCTGGAAGG 30939 Query 66266 GGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAA 66325 ||| || || ||| ||| | | ||||| || ||||| ||| ||| || ||||||| Sbjct 30938 GGAAATGGGAGACCAGCAAATTGCTCTGCAGGCACGCCTAATGAGTCAAGCTCTGCGCAA 30879 Query 66326 GCTGACCGG 66334 |||||| || Sbjct 30878 GCTGACTGG 30870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242442967732436