Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq179 208 8e-49 >seq179 Length=46302 Score = 208 bits (230), Expect = 8e-49 Identities = 1067/1696 (63%), Gaps = 44/1696 (3%) Strand=Plus/Minus Query 93887 CCATGGCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTT 93946 ||||| | |||||||| ||||| || || || ||||| || || |||||||||| | Sbjct 22190 CCATG-CGACCCCGACGCTGTTTAATGCCGGTACCCCTCGCCCCCAATTGTCTTCGTGCT 22132 Query 93947 TCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTG 94006 | | || | | || | || ||||| ||||| | || | | | || | |||| Sbjct 22131 TTTTATTGGCTATGAAAGATGATTCCATTGAAGGAATCTATGATACCTTGAAACAATGTG 22072 Query 94007 CGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGG 94066 || ||| || |||| || || || || || || ||| | ||| | | || |||| | Sbjct 22071 CGTGCATTTCGAAATGGGCAGGAGGGATTGGCATTAGTATGCACAATATCCGGGCCACGA 22012 Query 94067 GTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCT 94126 | ||||||||| || || |||||| | || ||||| | |||| ||||| || || | Sbjct 22011 ATAGCTACATCCGAGGCACTAATGGCTCTTCGAACGGGATTATCCCCATGCTTCGCGTGT 21952 Query 94127 TCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGG 94186 | || || |||| || |||||||| || ||||| || | | || || || || ||| Sbjct 21951 TTAATGACACGGCACGATACGTGGATCAAGGTGGCGGCAAACGCAAAGGATCGTTTGCGA 21892 Query 94187 TCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACG 94246 |||| | || || |||||||| |||||| | || |||| |||| || || || | Sbjct 21891 TCTACTTGGAACCGTGGCACGCAGACGTGTTTGAGTTTCTCGATTTGCGGAAAAATCATG 21832 Query 94247 GCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTA 94306 |||| || || | |||| | ||| | |||| || | ||||| || || || || | Sbjct 21831 GCAATGAACTCCATCGGGCGCGGGACTTGTTCTTTGCGTTGTGGGTACCCGATCTATTCA 21772 Query 94307 TGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGAC 94366 ||||||| || || ||| |||||| | || ||||| |||||| ||| || | Sbjct 21771 TGAAACGGGTGGAAGCAAATGGTAAGTGGAGTTTGTTCTGTCCAAATGAAGCTCCAGGGC 21712 Query 94367 TGTCCGACGTTTGTGGAT-CGCGTTTTGAAGACTT-GTATGCTCGTTACGAATCGCAGGG 94424 ||| ||| || || || |||| |||||| ||||| |||||| |||| Sbjct 21711 TGTACGAGTACTGGGGCGACGAGTTTG--AGACTTTGTATGAAAAGTACGAACAAGAGGG 21654 Query 94425 CAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGT 94484 ||| |||||| || |||| | |||||||| | |||| |||| | ||| | Sbjct 21653 ACGGGCGAGGAAGACGATCAATGCCCAGCAGCTGTGGTTTGCGATCTTGGATGCGCAGAT 21594 Query 94485 GGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCA 94544 || ||||| ||||| || | | ||||| | || ||| ||| || |||||||| Sbjct 21593 TGAAACGGGAGTGCCCTTTATGCTCTATAAGGATGCAGTGAACCGCAAATCGAACCAGCA 21534 Query 94545 GCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCC 94604 | |||| || |||| | | || ||||| || | | |||| || || || Sbjct 21533 GAACCTTGGCACGATCCGGTCCAGTAACTTGTGCTGTGAAGTGATGGAGTTCACGTCGCC 21474 Query 94605 GGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGC 94664 ||| || | || |||||||| ||| || | ||| ||| || || ||| | Sbjct 21473 GGATGAAGTGGCGGTGTGTAATTTGGCGTCGGTAGCGCTGCCCAAGTTTGTTGAAGACGG 21414 Query 94665 CTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCG-CGGGAAGGATGG 94723 | || || | | | ||| | || |||| | || || || | | Sbjct 21413 CGT---GTTTAATTACAAGA---AGCTGTACGAC---GTGACCAGCGTCGTGACGCGT-- 21365 Query 94724 TCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACT 94783 |||||||||| ||| || || ||| | ||||||||| | || || | | Sbjct 21364 -----AACCTGAACAAGGTGATTGAGGTGAATTACTACCCCGTTGCAGAAGCTCGCACGT 21310 Query 94784 CAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGA 94843 | ||| || || || || ||||||| || ||||||||| ||||||| ||| | | Sbjct 21309 CCAACATGCGCCACCGTCCAGTCGGCATTGGTGTCCAGGGTCTCGCGGATGCGTTTATTC 21250 Query 94844 TGATGCGTCTGCCCTACGACTCTGTCGACGCG-----GCGGGTT-TGAATTTGAACATAT 94897 | ||| ||||| | || || | ||||| ||||| |||||| | Sbjct 21249 TCATGAA------CTACGCGTTTGAAAGCGAGCAAGCGCGGGAGCTGAATAAGAACATCT 21196 Query 94898 TCGAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCG 94957 |||| | || || |||| | ||||| || | | | |||| ||| | Sbjct 21195 TCGAGACGATCTACTACGCTTCGATGAAGACGTCGATGGAGATTGCCAA---GGAATTGG 21139 Query 94958 GGCCACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCT 95017 | || |||| |||||| || || || | |||| || || ||||||||| | | Sbjct 21138 GTCCGTACGAGACGTTCCAGGGCTCTCCAGCGAGCAAGGGGATCTTCCAGTTCGACATGT 21079 Query 95018 GGGGTGTGAAGCCCTCG---GGTCTGTACGACTGG--GAAGCTCTACGCGCTGATGTTAT 95072 |||| || | ||| ||| ||||| | |||||| | || | | | | | || || Sbjct 21078 GGGGCGTCACGCCGTCGTCAGGTCTTTGGGACTGGACGGAGTTGAAGGAGA--ACGTGAT 21021 Query 95073 CAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCA 95132 ||| | || | ||| | ||||| ||||| || ||||| ||||| || ||||| || Sbjct 21020 CAAGTATGGCATTCGCAACTCTCTGCTCGTGGCGCCAATGCCGACGGCTTCGACGGCCCA 20961 Query 95133 GATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGT 95192 ||| || ||||||||||||||| | || || | ||| || || |||||||| | || || Sbjct 20960 GATTCTGGGCAACAACGAGTCGATTGAGCCGTACACGTCGAATATGTACAACCGCCGCGT 20901 Query 95193 GCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGG 95252 ||| || || || || | | | |||||| |||| | ||| ||| ||||| Sbjct 20900 GCTGGCTGGCGAGTTTACGATTGTAAACAAGTACCTGATGAAGGAATTGATTGACCTGGG 20841 Query 95253 TGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACAT 95312 | ||| | | ||| |||||| | || || | |||||||| || || | Sbjct 20840 CATCTGGACGCCCGAAGTCCGCAACCAAATTCTGAACGACGGTGGCTCCGTGCAAAAGGT 20781 Query 95313 CCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 | || ||| | || |||||| |||||||| |||||||| || |||| Sbjct 20780 TAAGACCATCCCGAATGATGTCAAGGAAAAGTACAAGACAGTGTGGGAAATTAAGCAGAA 20721 Query 95373 CGTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNNN 95432 ||| | || | | |||| | || || | | ||| |||||||| Sbjct 20720 GTCGATCTTGGATCTCTCGGCTGATCGTGGCGCGTACATTTGCCAGAGCCAGTCGCTCAA 20661 Query 95433 NNNNNNNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGAG 95492 || || || || | | | || | ||||| ||| || |||| ||||| Sbjct 20660 TATTCATATTGCGGATCCGACGATCAGTAAGCTGACGTCGATGCACTTTTACGCGTGGAA 20601 Query 95493 AAAGGGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATACA 95552 ||||| |||||||| ||||||||||| |||| | || || || ||| |||| || Sbjct 20600 GAAGGGGCTCAAGACGGGTATGTATTACATGCGTGGGCGCCCGAAAGCTGACGCCATCCA 20541 Query 95553 GTTCGCCCTAGAAAAG 95568 |||| || | || ||| Sbjct 20540 GTTCACCGTGGACAAG 20525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494665793556680