Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq69 147 2e-30 seq1314 105 7e-18 seq315 105 7e-18 >seq69 Length=63067 Score = 147 bits (162), Expect = 2e-30 Identities = 303/449 (67%), Gaps = 9/449 (2%) Strand=Plus/Plus Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451 || ||||| || |||| || ||| ||||| ||| | || || || ||| || | Sbjct 12950 GCGGAGCGGCTGCTGGCATTTGCCTCGGTCGAAGGCATTTTCTTCTCGGGCTCGTTCTGC 13009 Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511 | ||||||| | || | | || | ||||| ||||| | ||| |||||| | Sbjct 13010 TCGATCTTTTGGCTGAAGAAGCGCGGTCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTC 13069 Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC---TACTACAAGACGCGC 52568 || || || || || ||||||||||||||||||||||| |||| |||| | Sbjct 13070 ATTAGTCGAGATGAGGGCATGCACACGGACTTTGCGTGCCTCATGTACTCCAAG---CTA 13126 Query 52569 GTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATC 52628 |||| | || || |||| ||| | || | || || ||| | ||| Sbjct 13127 GTGAAC---AAGCTGCCCGAGGACCGCGTCCACACGATCATTCGCGACGCAGTGACGATC 13183 Query 52629 GAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCC 52688 || | |||||| | || | ||||||| || |||||| | ||||||||| || | | Sbjct 13184 GAGCACGAGTTTGTGCGGGACTCGCTGCCCGTTGAGCTGATTGGCATGAACTCGGCGCTC 13243 Query 52689 ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAG 52748 |||||| ||||||| |||||||| ||||| || |||||| |||||| | | ||| Sbjct 13244 ATGTGCCAGTACATTGAGTTTGTAGCGGACCGCCTGTTGTACTCGCTCGGCGTGTCGAAG 13303 Query 52749 TACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACC 52808 ||| | || || || ||||| | ||| ||| || |||||| |||||||||| Sbjct 13304 ATTTTCCATGCAAAGAACCCATTTGACTGGATGGACATGATCTCGCTTCAGGGCAAGACG 13363 Query 52809 AACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||||||||||| || |||||||| Sbjct 13364 AACTTTTTCGAGAAGCGTGTGGGCGAGTA 13392 >seq1314 Length=13110 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 ||||||| ||||||||||| | || || ||| || ||||| || |||| | ||| Sbjct 2067 CCTTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTGCCGGCAAAGA 2126 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGT 138543 | |||||||| ||||| ||||| || ||||| || || || || || || | |||| Sbjct 2127 TCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGCTTCACATTG- 2185 Query 138544 TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | | |||||| || |||||| || | ||| | ||| || || |||| || || ||| Sbjct 2186 TCAATGCTGTCGGACGGCTCCACGTCCAGCGTGATCGTCTTGCCTGTCAACGTCTTCACA 2245 Query 138604 AAAATCTGCATG 138615 || ||||||||| Sbjct 2246 AAGATCTGCATG 2257 >seq315 Length=59289 Score = 105 bits (116), Expect = 7e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || |||||||||||||||| ||||| ||| || || || || |||| | Sbjct 38602 GATTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCA 38661 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| ||||| || || || || || ||||| ||| || || || | | Sbjct 38662 AAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACA 38721 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | | ||| | || |||||| || | ||| | ||| || || |||| || || Sbjct 38722 TTG-TCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTCTTCCCTGTCAACGTCTT 38780 Query 138600 TACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 38781 CACGAAAATCTGCAT 38795 Score = 104 bits (114), Expect = 2e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||| ||||| |||| ||||| ||| || || || || |||| | Sbjct 38299 GACTCCTTCTGGATGTTATAGTCACTCAGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCA 38358 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| ||||| || || || || || ||||| ||| || || || | | Sbjct 38359 AAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACA 38418 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | | ||| | || |||||| || | ||| | ||| || || |||| || || Sbjct 38419 TTGT-CAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTCTTCCCTGTCAACGTCTT 38477 Query 138600 TACAAAAATCTGCATG 138615 || |||||||||||| Sbjct 38478 CACGAAAATCTGCATG 38493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496204814951760