Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq179 122 8e-23
seq315 104 2e-17
seq69 102 8e-17
seq5172 84.2 2e-11
>seq179
Length=46302
Score = 122 bits (134), Expect = 8e-23
Identities = 332/505 (66%), Gaps = 9/505 (2%)
Strand=Plus/Plus
Query 145693 TTGCCGCACGAGGCCGCCGCTTCGGCGTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGT 145752
|||| | ||||||| | |||| ||| ||||||||||| | || | ||| |||
Sbjct 20507 TTGCAGATCGAGGCC-CTGCTT----GTCCACGGTGAACTGGATGGCGTCAGCTTTCGGG 20561
Query 145753 TTTGTGCGCAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATG 145812
|||| || ||||| || ||||||||| |||| ||||| ||||||||| ||
Sbjct 20562 CGCCCACGCATGTAATACATACCCGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATC 20621
Query 145813 CTCGACA--TGACCGAGTACGTGGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGAT 145870
|| || | || || ||| || || || | | | ||| || || ||||||||
Sbjct 20622 GACGTCAGCTTACTGAT--CGTCGGATCCGCAATATGAATATTGAGCGACTGGCTCTGGC 20679
Query 145871 CAATGAAAGGAGCCCGGTCGGCGGCCATGTCTATCATGCACTTTGATTTAATTTCCCATG 145930
|||| | | | || || || | | || | || |||| |||||||||||
Sbjct 20680 AAATGTACGCGCCACGATCAGCCGAGAGATCCAAGATCGACTTCTGCTTAATTTCCCACA 20739
Query 145931 CGGTTTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCAT 145990
| || || | |||||||| | | || || | || || ||||| || |||
Sbjct 20740 CTGTCTTGTACTTTTCCTTGACATCATTCGGGATGGTCTTAACCTTTTGCACGGAGCCAC 20799
Query 145991 TTTCGGCCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCT 146050
||| || |||| |||||| | ||| || || | ||| || ||| | | |||
Sbjct 20800 CGTCGTTCAGAATTTGGTTGCGGACTTCGGGCGTCCAGATGCCCAGGTCAATCAATTCCT 20859
Query 146051 TGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGT 146110
| || || |||| ||| || | | ||||||||| || || ||||| | |||| |
Sbjct 20860 TCATCAGGTACTTGTTTACAATCGTAAACTCGCCAGCCAGCACGCGGCGGTTGTACATAT 20919
Query 146111 TGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAG 146170
| ||| ||||||| | |||||||||||| || || ||||| ||||||| ||| || |
Sbjct 20920 TCGACGTGTACGGCTCAATCGACTCGTTGTTGCCCAGAATCTGGGCCGTCGAAGCCGTCG 20979
Query 146171 GCATGTACGCCACCAGCAAAGAGTT 146195
|||| |||||| |||| ||||||
Sbjct 20980 GCATTGGCGCCACGAGCAGAGAGTT 21004
>seq315
Length=59289
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | ||||| || | ||| || || || || || ||||| |||| |
Sbjct 38569 CCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCGCTC 38628
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||| || || || ||||| || || || |||||| |||||||| || || ||
Sbjct 38629 AGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGG 38688
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| |||||||| | | || | | ||| | ||| ||
Sbjct 38689 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACG 38748
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| | || | ||| || || |||| || || || |||||||||||
Sbjct 38749 TCCAGCGTGATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCAT 38795
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | ||||| || | ||| ||||| || || || || || || | |
Sbjct 38266 CCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTATAGTCACTC 38325
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||| || || || ||||| || || || |||||| |||||||| || || ||
Sbjct 38326 AGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGG 38385
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| ||| |||||||| | | || | | ||| | ||| ||
Sbjct 38386 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACG 38445
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114
|| | || | ||| || || |||| || || || ||||||||||||
Sbjct 38446 TCCAGCGTGATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCATG 38493
>seq69
Length=63067
Score = 102 bits (112), Expect = 8e-17
Identities = 286/432 (66%), Gaps = 29/432 (7%)
Strand=Plus/Plus
Query 47160 GTCGAGGGCGTCTTCTTCTCGGGCAGCTT-TGCGGCGATATTTTACATGAAAACCAAAGG 47218
||||| ||| | |||||||||||| || ||| |||| |||| |||| | ||
Sbjct 12977 GTCGAAGGCATTTTCTTCTCGGGCTCGTTCTGCT-CGATCTTTTGGCTGAAGAAGCGCGG 13035
Query 47219 AGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACAC 47278
| ||||| ||||||| || |||||||| || |||| || ||| |||||||
Sbjct 13036 TCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTCATTAGTCGAGATGAGGGCATGCACAC 13095
Query 47279 CAACTTTGCCTGTCTC---TACTACAACACTAGAGTCGATCAAAAGTTGGACGTGCCCAC 47335
||||||| || ||| |||| ||| |||| | | ||| || || | |
Sbjct 13096 GGACTTTGCGTGCCTCATGTACTCCAAG-CTAGTGA-----ACAAGCTGCCCGAGGACCG 13149
Query 47336 CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCT 47395
|||| | || || ||| || || | || ||| |||||| | || | ||
Sbjct 13150 CGTCCACACGATCATTCGCGACGCAGTGACGATCGAGCACGAGTTTGTGCGGGACTCGCT 13209
Query 47396 GCCCGAATCTTTAG----TGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTG 47451
||||| || || | || |||||| ||| | | ||| | ||||||| || ||||
Sbjct 13210 GCCCG----TTGAGCTGATTGGCATGAACTCGGCGCTCATGTGCCAGTACATTGAGTTTG 13265
Query 47452 TCGCCGACCGCCTG-----CTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAA 47506
| || ||||||||| |||| || || || || ||||||| ||| | ||||
Sbjct 13266 TAGCGGACCGCCTGTTGTACTCGCTCGGC----GTGTCG-AAGATTTTCCATGCAAAGAA 13320
Query 47507 TCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCG 47566
||||| || | ||| ||| || ||||| |||||||||| |||||||||||||||||
Sbjct 13321 CCCATTTGACTGGATGGACATGATCTCGCTTCAGGGCAAGACGAACTTTTTCGAGAAGCG 13380
Query 47567 CGTCGGCGAATA 47578
|| ||||| ||
Sbjct 13381 TGTGGGCGAGTA 13392
>seq5172
Length=1594
Score = 84.2 bits (92), Expect = 2e-11
Identities = 151/221 (68%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 47350 TTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAG 47409
||||||| || || || ||||| ||| ||| || |||| || |||| | | |
Sbjct 1196 TTGCCGACGCGGTTGCAATTGAACAGGAATTTGTCACCGATGCCTTGCCTGTACGCCTGA 1137
Query 47410 TGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCG 47469
| || |||||||| || |||||| | |||||||||| ||||| || |||||||||||
Sbjct 1136 TCGGTATGAACGCTGACCTGATGAAACAGTACATCGAGTTTGTTGCTGACCGCCTGCTAC 1077
Query 47470 TTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACA 47529
| || | ||||| || || ||| | | ||||| || || |||||| | |
Sbjct 1076 TGACACTGGGTGAGCCCAAAATGTATCACGCTCAAAATCCCTTTGACTTTATGGAACTGA 1017
Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 47570
|||| | | ||||| ||||| || || || || || |||
Sbjct 1016 TTTCATTACAAGGCAAAACCAATTTCTTTGAAAAACGTGTC 976
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475445624075920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |