Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq179 122 8e-23 seq315 104 2e-17 seq69 102 8e-17 seq5172 84.2 2e-11 >seq179 Length=46302 Score = 122 bits (134), Expect = 8e-23 Identities = 332/505 (66%), Gaps = 9/505 (2%) Strand=Plus/Plus Query 145693 TTGCCGCACGAGGCCGCCGCTTCGGCGTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGT 145752 |||| | ||||||| | |||| ||| ||||||||||| | || | ||| ||| Sbjct 20507 TTGCAGATCGAGGCC-CTGCTT----GTCCACGGTGAACTGGATGGCGTCAGCTTTCGGG 20561 Query 145753 TTTGTGCGCAGATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATG 145812 |||| || ||||| || ||||||||| |||| ||||| ||||||||| || Sbjct 20562 CGCCCACGCATGTAATACATACCCGTCTTGAGCCCCTTCTTCCACGCGTAAAAGTGCATC 20621 Query 145813 CTCGACA--TGACCGAGTACGTGGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGAT 145870 || || | || || ||| || || || | | | ||| || || |||||||| Sbjct 20622 GACGTCAGCTTACTGAT--CGTCGGATCCGCAATATGAATATTGAGCGACTGGCTCTGGC 20679 Query 145871 CAATGAAAGGAGCCCGGTCGGCGGCCATGTCTATCATGCACTTTGATTTAATTTCCCATG 145930 |||| | | | || || || | | || | || |||| ||||||||||| Sbjct 20680 AAATGTACGCGCCACGATCAGCCGAGAGATCCAAGATCGACTTCTGCTTAATTTCCCACA 20739 Query 145931 CGGTTTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTTCTGCACAGACCCAT 145990 | || || | |||||||| | | || || | || || ||||| || ||| Sbjct 20740 CTGTCTTGTACTTTTCCTTGACATCATTCGGGATGGTCTTAACCTTTTGCACGGAGCCAC 20799 Query 145991 TTTCGGCCAATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCT 146050 ||| || |||| |||||| | ||| || || | ||| || ||| | | ||| Sbjct 20800 CGTCGTTCAGAATTTGGTTGCGGACTTCGGGCGTCCAGATGCCCAGGTCAATCAATTCCT 20859 Query 146051 TGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGT 146110 | || || |||| ||| || | | ||||||||| || || ||||| | |||| | Sbjct 20860 TCATCAGGTACTTGTTTACAATCGTAAACTCGCCAGCCAGCACGCGGCGGTTGTACATAT 20919 Query 146111 TGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAG 146170 | ||| ||||||| | |||||||||||| || || ||||| ||||||| ||| || | Sbjct 20920 TCGACGTGTACGGCTCAATCGACTCGTTGTTGCCCAGAATCTGGGCCGTCGAAGCCGTCG 20979 Query 146171 GCATGTACGCCACCAGCAAAGAGTT 146195 |||| |||||| |||| |||||| Sbjct 20980 GCATTGGCGCCACGAGCAGAGAGTT 21004 >seq315 Length=59289 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | ||| || || || || || ||||| |||| | Sbjct 38569 CCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCGCTC 38628 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || || || ||||| || || || |||||| |||||||| || || || Sbjct 38629 AGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGG 38688 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| |||||||| | | || | | ||| | ||| || Sbjct 38689 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACG 38748 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| || || |||| || || || ||||||||||| Sbjct 38749 TCCAGCGTGATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCAT 38795 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | ||| ||||| || || || || || || | | Sbjct 38266 CCACCGCGCAGGCGAAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTATAGTCACTC 38325 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || || || ||||| || || || |||||| |||||||| || || || Sbjct 38326 AGCGTACGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGG 38385 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| |||||||| | | || | | ||| | ||| || Sbjct 38386 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACG 38445 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | || | ||| || || |||| || || || |||||||||||| Sbjct 38446 TCCAGCGTGATCGTCTTCCCTGTCAACGTCTTCACGAAAATCTGCATG 38493 >seq69 Length=63067 Score = 102 bits (112), Expect = 8e-17 Identities = 286/432 (66%), Gaps = 29/432 (7%) Strand=Plus/Plus Query 47160 GTCGAGGGCGTCTTCTTCTCGGGCAGCTT-TGCGGCGATATTTTACATGAAAACCAAAGG 47218 ||||| ||| | |||||||||||| || ||| |||| |||| |||| | || Sbjct 12977 GTCGAAGGCATTTTCTTCTCGGGCTCGTTCTGCT-CGATCTTTTGGCTGAAGAAGCGCGG 13035 Query 47219 AGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACAC 47278 | ||||| ||||||| || |||||||| || |||| || ||| ||||||| Sbjct 13036 TCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTCATTAGTCGAGATGAGGGCATGCACAC 13095 Query 47279 CAACTTTGCCTGTCTC---TACTACAACACTAGAGTCGATCAAAAGTTGGACGTGCCCAC 47335 ||||||| || ||| |||| ||| |||| | | ||| || || | | Sbjct 13096 GGACTTTGCGTGCCTCATGTACTCCAAG-CTAGTGA-----ACAAGCTGCCCGAGGACCG 13149 Query 47336 CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCT 47395 |||| | || || ||| || || | || ||| |||||| | || | || Sbjct 13150 CGTCCACACGATCATTCGCGACGCAGTGACGATCGAGCACGAGTTTGTGCGGGACTCGCT 13209 Query 47396 GCCCGAATCTTTAG----TGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTG 47451 ||||| || || | || |||||| ||| | | ||| | ||||||| || |||| Sbjct 13210 GCCCG----TTGAGCTGATTGGCATGAACTCGGCGCTCATGTGCCAGTACATTGAGTTTG 13265 Query 47452 TCGCCGACCGCCTG-----CTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAA 47506 | || ||||||||| |||| || || || || ||||||| ||| | |||| Sbjct 13266 TAGCGGACCGCCTGTTGTACTCGCTCGGC----GTGTCG-AAGATTTTCCATGCAAAGAA 13320 Query 47507 TCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCG 47566 ||||| || | ||| ||| || ||||| |||||||||| ||||||||||||||||| Sbjct 13321 CCCATTTGACTGGATGGACATGATCTCGCTTCAGGGCAAGACGAACTTTTTCGAGAAGCG 13380 Query 47567 CGTCGGCGAATA 47578 || ||||| || Sbjct 13381 TGTGGGCGAGTA 13392 >seq5172 Length=1594 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 47350 TTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAG 47409 ||||||| || || || ||||| ||| ||| || |||| || |||| | | | Sbjct 1196 TTGCCGACGCGGTTGCAATTGAACAGGAATTTGTCACCGATGCCTTGCCTGTACGCCTGA 1137 Query 47410 TGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCG 47469 | || |||||||| || |||||| | |||||||||| ||||| || ||||||||||| Sbjct 1136 TCGGTATGAACGCTGACCTGATGAAACAGTACATCGAGTTTGTTGCTGACCGCCTGCTAC 1077 Query 47470 TTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACA 47529 | || | ||||| || || ||| | | ||||| || || |||||| | | Sbjct 1076 TGACACTGGGTGAGCCCAAAATGTATCACGCTCAAAATCCCTTTGACTTTATGGAACTGA 1017 Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 47570 |||| | | ||||| ||||| || || || || || ||| Sbjct 1016 TTTCATTACAAGGCAAAACCAATTTCTTTGAAAAACGTGTC 976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475445624075920