Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_012740.1 Length=166418 Score E Sequences producing significant alignments: (Bits) Value seq2003 145 8e-30 >seq2003 Length=7520 Score = 145 bits (160), Expect = 8e-30 Identities = 288/420 (69%), Gaps = 6/420 (1%) Strand=Plus/Minus Query 139678 CATCAGGTTATTAATCTGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCC 139737 ||||||| || ||||| ||||| ||||| |||||||| | ||||| ||||| || || Sbjct 7093 CATCAGGCGGTTGATCTGCACGCCATAATCGAGATGACGCACACGGTTTTCTTCTACGCC 7034 Query 139738 CTTATTGTTCTTTAACACAATCAGACTTTCAAACTCTAAATGCCATATTGGGTAATAGAG 139797 ||||| || | ||| | ||| ||| | || | ||||| | ||||| | | Sbjct 7033 GCGGTTGTTTTTCAGCACCAGCAGTGATTCGACTTCAAGGTGCCACAACGGGTAGAACAA 6974 Query 139798 AGTCGCCGCCCCGCCACGAATGCCGCCTTGTGAGCATGACTTAACGGCCGTCTGAAAATG 139857 ||||||||||| || || | ||||| || ||||| || || || || | ||| || | Sbjct 6973 CGTCGCCGCCCCACCCCGCACACCGCCCTGCGAGCAGGATTTCACCGCAGACTGGAACAG 6914 Query 139858 TTTCCAGAATGGGATAACGCCAGTATGACGAACTTCACCATGCC-CG-ATCTTAGATCCT 139915 ||| |||| || | || ||||| | |||| || ||| || |||| || Sbjct 6913 TTTGTAGAACGGCAGGCAACCGGTATGTTGCGCTTCGCC--GCCACGTATCTCGCTGCCC 6856 Query 139916 TCCGCGCGAATCATGCCAGCGTTGATACCGATACCAGCACGCTTGCTA-ATATACTTGAT 139974 |||||| || ||| ||||||| || || || || || |||| | | |||||| | Sbjct 6855 AGCGCGCGGATGCGGCCCGCGTTGACGCCTATGCCGGCGCG-TTGCGAGACATACTTCAC 6797 Query 139975 GATTGCATTTGCTGTTTCGTTGATGCCCTGCAATGAGTCATCACTTTCGATCACCACACA 140034 ||| || | | ||| | ||||||| | || |||||||| ||||||| || || Sbjct 6796 GATCGCGCTGGTGGTTGCATTGATGCTGTCCAGGCTGTCATCACACTCGATCAGTACGCA 6737 Query 140035 CGAACTAAATTGGCGTGTTGGGGTACGCACACCTGCCATAATCGGAGTAGGTAGAGAGAT 140094 || || || ||||| || || ||||||||||| ||||| || || ||||| || ||||| Sbjct 6736 GGAGCTGAACTGGCGCGTAGGAGTACGCACACCGGCCATGATAGGCGTAGGCAGCGAGAT 6677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532347820521040