Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_012740.1
Length=166418
Score E
Sequences producing significant alignments: (Bits) Value
seq2003 145 8e-30
>seq2003
Length=7520
Score = 145 bits (160), Expect = 8e-30
Identities = 288/420 (69%), Gaps = 6/420 (1%)
Strand=Plus/Minus
Query 139678 CATCAGGTTATTAATCTGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCC 139737
||||||| || ||||| ||||| ||||| |||||||| | ||||| ||||| || ||
Sbjct 7093 CATCAGGCGGTTGATCTGCACGCCATAATCGAGATGACGCACACGGTTTTCTTCTACGCC 7034
Query 139738 CTTATTGTTCTTTAACACAATCAGACTTTCAAACTCTAAATGCCATATTGGGTAATAGAG 139797
||||| || | ||| | ||| ||| | || | ||||| | ||||| | |
Sbjct 7033 GCGGTTGTTTTTCAGCACCAGCAGTGATTCGACTTCAAGGTGCCACAACGGGTAGAACAA 6974
Query 139798 AGTCGCCGCCCCGCCACGAATGCCGCCTTGTGAGCATGACTTAACGGCCGTCTGAAAATG 139857
||||||||||| || || | ||||| || ||||| || || || || | ||| || |
Sbjct 6973 CGTCGCCGCCCCACCCCGCACACCGCCCTGCGAGCAGGATTTCACCGCAGACTGGAACAG 6914
Query 139858 TTTCCAGAATGGGATAACGCCAGTATGACGAACTTCACCATGCC-CG-ATCTTAGATCCT 139915
||| |||| || | || ||||| | |||| || ||| || |||| ||
Sbjct 6913 TTTGTAGAACGGCAGGCAACCGGTATGTTGCGCTTCGCC--GCCACGTATCTCGCTGCCC 6856
Query 139916 TCCGCGCGAATCATGCCAGCGTTGATACCGATACCAGCACGCTTGCTA-ATATACTTGAT 139974
|||||| || ||| ||||||| || || || || || |||| | | |||||| |
Sbjct 6855 AGCGCGCGGATGCGGCCCGCGTTGACGCCTATGCCGGCGCG-TTGCGAGACATACTTCAC 6797
Query 139975 GATTGCATTTGCTGTTTCGTTGATGCCCTGCAATGAGTCATCACTTTCGATCACCACACA 140034
||| || | | ||| | ||||||| | || |||||||| ||||||| || ||
Sbjct 6796 GATCGCGCTGGTGGTTGCATTGATGCTGTCCAGGCTGTCATCACACTCGATCAGTACGCA 6737
Query 140035 CGAACTAAATTGGCGTGTTGGGGTACGCACACCTGCCATAATCGGAGTAGGTAGAGAGAT 140094
|| || || ||||| || || ||||||||||| ||||| || || ||||| || |||||
Sbjct 6736 GGAGCTGAACTGGCGCGTAGGAGTACGCACACCGGCCATGATAGGCGTAGGCAGCGAGAT 6677
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 532347820521040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |