Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_012741.1 Length=171451 Score E Sequences producing significant alignments: (Bits) Value seq2003 84.2 2e-11 >seq2003 Length=7520 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 142992 CATCAGGTCGTTTAACTGGATTCCGTAGTCCATATGACGAATACGGTTTTCATCGACACC 143051 ||||||| ||| | ||| | || || || | |||||| | ||||||||| || || || Sbjct 7093 CATCAGGCGGTTGATCTGCACGCCATAATCGAGATGACGCACACGGTTTTCTTCTACGCC 7034 Query 143052 TTTGTTGTTTTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 143111 |||||||||||| || ||||| ||| ||||| | ||||| | || || | Sbjct 7033 GCGGTTGTTTTTCAGCACCAGCAGTGATTCGACTTCAAGGTGCCACAACGGGTAGAACAA 6974 Query 143112 AGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATG 143171 || || || || || || | || || || || || ||||| || |||| |||||| | Sbjct 6973 CGTCGCCGCCCCACCCCGCACACCGCCCTGCGAGCAGGATTTCACCGCAGACTGGAACAG 6914 Query 143172 TTTCCAGAATGGAATAACACCAGTATGTT 143200 ||| |||| || | ||| ||||||| Sbjct 6913 TTTGTAGAACGGCAGGCAACCGGTATGTT 6885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548451551667480