Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq1469 140 8e-29 >seq1469 Length=11399 Score = 140 bits (154), Expect = 8e-29 Identities = 242/351 (69%), Gaps = 3/351 (1%) Strand=Plus/Minus Query 8769 GCTCGGGATGATTGTCGTTGACTACCTGCAGCTGATGTCGGGTGACGGCGGCGGATC--- 8825 |||||| ||||||| | ||||| ||||| ||||| || | ||| | | Sbjct 8395 GCTCGGTTTGATTGTGATCGACTATTTGCAGTTGATGACGTCACCCTCAGGCAAAGCCGG 8336 Query 8826 TGAAATGCGGGCCACCGAGGTCGCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGA 8885 ||||| ||||| ||||| || | ||||| |||||| | |||||| | || || || Sbjct 8335 TGAAAACCGGGCGACCGAAATCTCTGAAATCTCGCGCTCGCTCAAAGCCCTGGCCAAAGA 8276 Query 8886 ACTCGACGTTCCGATCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAA 8945 ||||| || || | || || | || ||| | || || | | || | || || | Sbjct 8275 GCTCGATGTGCCTGTGATTGCTATTTCACAGTTGAACCGTAGCGTGGACCAGCGTCCCGA 8216 Query 8946 CAAGCGGCCCGTCATGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGT 9005 || || || |||||| || ||||| || || || || || ||||||||||| ||| | Sbjct 8215 TAAACGCCCGGTCATGAGTGACCTGCGTGAATCCGGGGCTATTGAGCAGGATGCTGACTT 8156 Query 9006 GATCCTCTTTATCTACCGCGATGAGGTCTATAACCCCGACAGCGCAGATCGCGGTACGGC 9065 ||| | || | ||||| || ||| ||| ||||| ||||| || || |||||||| Sbjct 8155 GATTATGTTCGTATACCGTGACGAGTACTACAACCCGGACAGTGCTGAAAAAGGTACGGC 8096 Query 9066 CGAAATCATCATTGCGAAGCAGCGAAACGGGCCGATTGGCACCGTACGGCT 9116 ||||| |||||||| |||||||| ||||| || ||||| |||||||| Sbjct 8095 GGAAATTATCATTGCCAAGCAGCGTAACGGTCCAATTGGTCGTGTACGGCT 8045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127531539931068