Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq179 176 6e-39 seq69 143 3e-29 seq4319 104 3e-17 seq1591 98.7 1e-15 seq8027 95.1 1e-14 seq4 82.4 9e-11 >seq179 Length=46302 Score = 176 bits (194), Expect = 6e-39 Identities = 657/1012 (65%), Gaps = 35/1012 (3%) Strand=Plus/Plus Query 116238 AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA 116297 |||||| ||||||||||||| |||||||| | ||| | ||| || || | ||| || || Sbjct 21251 AATAAACGCATCCGCGAGACCCTGGACACCAATGCCGACTGGACGGTGGCGCATGTTGGA 21310 Query 116298 CTTTCGAGCGGTCTCCA-CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGG 116356 | | ||||| ||| || |||| || ||||| || || ||| | || || || | Sbjct 21311 CGTGCGAGCT-TCTGCAACGGGGTAGTAATTCACCTCAATCACCTTGTTCAGGTTACGCG 21369 Query 116357 TGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAA-ACTGCGAGTCTCTTCATTG 116415 | || || | || | || | ||||| | ||||| ||| || || |||||| Sbjct 21370 TCACGACGCTGGTCACGTCGTACAGCTTCTTGTAATTAAACACGCCG----TCTTCA--- 21422 Query 116416 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 116475 ||| |||| || || || | ||||||| ||||||||| | |||||| ||| Sbjct 21423 ACAAACTTGGGCAGCGCTACCGACGCCAAATTACACACCGCCACTTCATCCGGCGACGTG 21482 Query 116476 TACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGAT 116533 |||| || | ||| ||||| || || || || ||||| | ||||| || | Sbjct 21483 AACTCCATCACTTCACAGCACAAGTTACTGGACCGG--ATCGTGCCAAGGTTCTGCTGGT 21540 Query 116534 TTGACTTTGTGTTACAC-GCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGG 116592 | || |||| | | ||| |||||||| ||||||||| | ||| ||||| || | || Sbjct 21541 TCGA-TTTGCGGTTCACTGCATCCTTATAGAGCATAAAGGGCACTCCCGTTTCAATCTGC 21599 Query 116593 GACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGG-CGT-----TGGCTCGC 116646 | | | || || ||| | || ||||| || || ||| | || || Sbjct 21600 GCATCCAAGATCGCAAACCACA-----GCTGCTGGG-CATTGATCGTCTTCCTCGCCCGT 21653 Query 116647 CCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAG 116705 ||||| | ||||||||| || | | ||||||||| || ||| ||| ||| | || Sbjct 21654 CCCTCTTGTTCGTACTTTTCATACAAAGTCTCAAACTCGTCGCCC-CAGTACTCGTACAG 21712 Query 116706 CCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCAT 116765 |||||| || | || ||||||||| | | ||| | |||| | || ||||| ||||| Sbjct 21713 CCCTGGAGCTTCATTTGGACAGAACAAACTCCACTTACCATTTGCTTCCACCCGTTTCAT 21772 Query 116766 GAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCC 116825 ||| || || || | ||| | ||| |||| | ||||| ||| ||||| || Sbjct 21773 GAATAGATCGGGTACCCACAACGCAAAGAACAAGTCCCGCGCCCGATGGAGTTCATTGCC 21832 Query 116826 CTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACAC 116885 ||||| ||||| || | ||| || | | || |||||||||||||||| ||| | Sbjct 21833 ATGATTTTTCCGCAAATCGAGAAACTCAAACACGTCTGCGTGCCACGGTTCCAAGTAGAT 21892 Query 116886 CGCGATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAA 116942 ||| | || || ||||| | ||| | || | || || | ||||| | ||||| Sbjct 21893 CGCAAACGATCCTTTGCGTTTGCCGCCACCTTGATCCACGTATCGTGCCGTGTCATTAAA 21952 Query 116943 TACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTT 117002 ||||||||||| || || || || | || |||||| || || || || || Sbjct 21953 CACGCGAAGCATGGGGATAATCCCGTTCGAAGAGCCATTAGTGCCTCGGATGTAGCTATT 22012 Query 117003 GTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGC 117062 |||| | || || ||| || || ||||| || |||||||| || || || || Sbjct 22013 CGTGGCCCGGATATTGTGCATACTAATGCCAATCCCTCCTGCCCATTTCGAAATGCACGC 22072 Query 117063 GCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAA 117122 || | | | | | ||||| || || || || ||| | || | || | | || Sbjct 22073 ACATTGTTTCAAGGTATCATAGATTCCTTCAATGGAATCATCTTTCATAGCCAATAAAAA 22132 Query 117123 GCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGAT 117182 ||| |||| ||| || | || ||||| || || || || || || ||||| ||| | Sbjct 22133 GCACGAAGACAATTGGGGGCGAGGGGTACCGGCATTAAACAGCGTCGGGGTCGCATGGGT 22192 Query 117183 GAACATACCT-TGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTC 117233 || | || | || ||||| || || || ||||| ||| | |||||| Sbjct 22193 -AAAAAACTTCTGCGACATTAATTCATATGTTTCCAACGCAGCGATAATGTC 22243 >seq69 Length=63067 Score = 143 bits (158), Expect = 3e-29 Identities = 532/823 (65%), Gaps = 17/823 (2%) Strand=Plus/Minus Query 127221 CCAGC-TTGCCGTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTG 127279 ||||| ||| ||| || || || ||||||||||| ||||| ||||| || | || | Sbjct 13404 CCAGCCTTGGAGTACTCGCCCACACGCTTCTCGAAAAAGTTCGTCTTGCCCTGAAGCGAG 13345 Query 127280 ATATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGT 127339 || | ||||| | |||||||||||||||| | |||| | | ||| || | | Sbjct 13344 ATCATGTCCATCCAGTCAAATGGGTTCTTTGCATGGAAAATCTTCGACACGCCGAGCGAG 13285 Query 127340 TTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCG 127399 | | || || |||| || |||||||||||| |||| | | |||||||| || Sbjct 13284 TACAACAGGCGGTCCGCTACAAACTCAATGTACTGGCACATGAGCGCCGAGTTCATGCCA 13225 Query 127400 ATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGT 127459 || || | | || |||| |||| | ||| | | ||| || ||| || || || Sbjct 13224 ATCAGCTCAACGGGCAGCGAGTCCCGCACAAACTCGTGCTCGATCGTCACTGCGTCGCGA 13165 Query 127460 ACGATGGCGTGAATAGTGTCCACCC-CAGGT----CTATTGCGTAAAGT-CTTGAAGAGT 127513 | ||| | ||| | |||| | ||| | | | || | ||| | ||| | Sbjct 13164 ATGATCGTGTGGACGCGGTCCTCGGGCAGCTTGTTCACTAGCTTGGAGTACATGAGG--- 13108 Query 127514 TCCACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCAC 127573 ||| ||||| || ||| | ||||| || || ||||| || |||||||||| Sbjct 13107 --CAC-GCAAAGTCCGTGTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGAAGCTG 13051 Query 127574 AGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAG 127633 || || ||||||||||| |||||||||| ||| || |||| || || ||||| |||||| Sbjct 13050 AGGCCAGGCATGAGACCGCGCTTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCGAGAAG 12991 Query 127634 AAGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTT-TGT 127692 || || || || || | || || || | || ||||| || | || | |||| || Sbjct 12990 AAAATGCCTTCGACCGAGGCAAATGCCAGCAGCCGCTCCGCGTACGA-AGATACTTGTGG 12932 Query 127693 ATCAAACCACTTCATCGCCCACTGTGCCTTTTTCTCG-ATACATGGGACGGTCTGGATCG 127751 || ||||||| | |||||| | || |||| | ||| | ||| |||| ||||| |||| Sbjct 12931 GTCGCACCACTTGAGCGCCCAAT-TGGCTTTCTTTCGAACACACGGGATGGTCTCAATCG 12873 Query 127752 CTTCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAAT 127811 | | || | | ||| || | | ||||| |||||| | || ||||| |||| Sbjct 12872 CGCGCAGAAGGTGATCCTTCTCCGTCGCCTCTTTAATGTACGTGTCAATGAGCAGCGAAT 12813 Query 127812 ATGTTTCGCCGTGGACCATTTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGC 127871 | ||| ||||| ||||| | | ||| | | || || | || ||||| Sbjct 12812 AGACTTCCGAGTGGATGTTTTCAATCGCGATCTGGAAGCCATAAAAGCACCGAGCTTCCG 12753 Query 127872 TTATCTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACC 127931 | || || |||| | ||| || | | |||||| ||||| ||||| Sbjct 12752 GCACTTGCACTTCATTGCTAAAGTTCATGGCCAGATTCTCGTTCACAATGCCATCACTGG 12693 Query 127932 CAGCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCC 127991 | ||||| || || || | || ||| || || | | ||||| || | ||| || || Sbjct 12692 CTGCAAAGAAGGCGAGCACATGCTTGATAAAGTGACGCTCATTGTCCGTGAGGTTCGCCC 12633 Query 127992 AGTCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 |||| | |||||| | | |||| |||||| |||||||| Sbjct 12632 AGTCCTTGAGATCGTGCACCAAGTCTAGCTCCTCAGCAGTCCA 12590 >seq4319 Length=2037 Score = 104 bits (114), Expect = 3e-17 Identities = 199/288 (69%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 || |||||||| || || || || | ||| | ||||| |||||| ||||||||| || Sbjct 1372 CGGTCAAAGCGGCCGGGACGCAGCAAAGCGGCATCAAGAATATCAGGGCGGTTCGTTGCA 1313 Query 12762 GCGATGACAA-CGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATT 12820 || || |||| || || | | || || ||||| ||||| ||| ||| | || || Sbjct 1312 GCAATCACAATCGTTGAGTGATT-GTCTTCAAAGCCGTCCATTTCAATCAGCAACTGGTT 1254 Query 12821 GATGGTTTGTTCACGTTCATCATT--CGCGGGC-ATACCACCCGCACTGCGTTGCTTACC 12877 | ||||||||| || ||||||| ||| | | ||||| |||| || || ||| Sbjct 1253 AAGGGTTTGTTCGCGCTCATCATGACCGCCGCCCATACCT---GCACCACGCTGACGACC 1197 Query 12878 GACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAA 12937 ||||||||||||||||| || || | | ||| || || || ||| ||||| Sbjct 1196 AACGGCGTCAATTTCGTCGATAAAGATCAAACAGGGAGCATGTTTTTTGGCCTGGTCAAA 1137 Query 12938 GATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 | || || |||| ||||| |||||||||||||| || ||||| Sbjct 1136 CAAGTCACGGACTCGAGAAGCACCCACACCCACAAACATTTCAACAAA 1089 >seq1591 Length=10447 Score = 98.7 bits (108), Expect = 1e-15 Identities = 244/369 (66%), Gaps = 6/369 (2%) Strand=Plus/Minus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 || ||||| || || || || | | ||| | || || | |||| ||||| || || Sbjct 1357 CGGTCAAAACGGCCAGGACGCAACAAGGCTTTATCCAGCACATCAGCACGGTTGGTTGCA 1298 Query 12762 GCGATGACAACGATGCCCGTCTCGTTA---TCGAAGCCATCCATCTCAGTCAAGAGTTGA 12818 ||||| |||| | ||| | |||| || || ||||||||||| ||| | || Sbjct 1297 GCGATCACAATCACGCCGGA---GTTAGCCTCAAAACCATCCATCTCCACCAACATCTGG 1241 Query 12819 TTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCACCCGCACTGCGTTGCTTACCG 12878 || | ||||||||||| || || || | | ||| |||| || || ||| Sbjct 1240 TTCAATGTTTGTTCACGCTCGTCGTTACCACCACCAGTACCTGCACCACGATGACGACCT 1181 Query 12879 ACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAG 12938 || |||||||| || || || |||| |||||| || ||||| ||| |||||| Sbjct 1180 ACAGCGTCAATCTCATCGATAAAAATGATACAAGGCGCATTTTTCTTGGCTGTTTCAAAC 1121 Query 12939 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAA 12998 || || ||||| | ||||| ||||| ||||||||||| ||||| | | | ||| Sbjct 1120 ATGTCACGCACGCGTGCCGCACCCACACCGACAAACATCTCGACAAAGTCAGAACCTGAA 1061 Query 12999 CATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCC 13058 || ||| || || || | ||||| || || || ||||| || | ||| || || Sbjct 1060 ATACTGAAGAAAGGCACTTTTGCCTCACCGGCAATCGCACGGGCCAGCAAGGTTTTACCT 1001 Query 13059 GTCCCTGGT 13067 ||||| ||| Sbjct 1000 GTCCCAGGT 992 >seq8027 Length=1067 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 115552 TTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATT 115611 |||| || ||||||||||| || || ||||| || | |||||| |||| | |||||| Sbjct 465 TTTGTCCGCAGGTAGTACATGCCGGTTTTGAGGCCTTTTTTCCAGCCATAAAAATGCATG 406 Query 115612 GAGGACAACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCG 115671 |||| || ||||||| | || |||||||| || || || | || || ||| | Sbjct 405 GAGGTCAGCTTGGAGTAGCTGGGGCTTTCCATAAACAGATTTAAGGACTGAGACTGACAG 346 Query 115672 ATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACA 115731 || ||| || || || || |||||||| |||| | | |||||||||||| || Sbjct 345 ATAAAGGCGCCACGGTCAGCTGCCATATCGATCAGGGCACGCTGCTTGATTTCCCAGACG 286 Query 115732 GTTCTGTAGA 115741 ||| |||||| Sbjct 285 GTTTTGTAGA 276 >seq4 Length=112988 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 177728 GAGTAGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTCCACCAACAATTCTCTTCTTG 177787 ||| ||||||| | | ||||||||||||||||| ||||||||| | ||||||| Sbjct 77935 GAGAAGATGTTGGCGAGTTTGGCACCGTAGCCATTCCGTCCACCAGTCGTCTTCTTCTTC 77876 Query 177788 TTGTCATCGTAGTTTGTACTCGTGAGAAGGTGACCAAAGGTAAGTTCTGG 177837 ||||| || |||| | | |||||| | |||||||||| | ||||| || Sbjct 77875 TTGTCGTCAAAGTTACTGCCCGTGAGCAAGTGACCAAAGATCAGTTCGGG 77826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613436010158280