Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_013693.1 Length=158006 Score E Sequences producing significant alignments: (Bits) Value seq2003 140 3e-28 >seq2003 Length=7520 Score = 140 bits (154), Expect = 3e-28 Identities = 294/429 (69%), Gaps = 12/429 (3%) Strand=Plus/Minus Query 53643 CAGGCGCTCAAACATCACGCGGTTGATCTGAATACCGTAGTCGATACGGCGTTCGCGGTT 53702 |||||||| |||||| |||||||||||| | || || |||| | | || | ||||| Sbjct 7105 CAGGCGCTGGTACATCAGGCGGTTGATCTGCACGCCATAATCGAGATGACGCACACGGTT 7046 Query 53703 TTCTTCAGTGCCACGGTTATTCTTCAGTACAACGACGTCATCGAACTGGTAA-TGCCACA 53761 |||||| ||| ||||| || ||||| || | | || || ||| | ||||||| Sbjct 7045 TTCTTCTACGCCGCGGTTGTTTTTCAGCACCAGCA-GTGATTCGACTTCAAGGTGCCACA 6987 Query 53762 GAGGGATGTACGCTGTCGCCGCACCACCACGAATGCCGCCCTGGGAGCAAGACTTGAGCG 53821 ||| | || |||||||| ||||| || | |||||||| ||||| || || | || Sbjct 6986 ACGGGTAGAACAACGTCGCCGCCCCACCCCGCACACCGCCCTGCGAGCAGGATTTCACCG 6927 Query 53822 CCCCAGTGAGATACTTGAT-GAATGGGATCAGGC---CTGTGTGAACCATCTCTCCGCCG 53877 | | || | | || | ||| || ||||| | || || | || ||||| Sbjct 6926 CAG-ACTGGAACAGTTTGTAGAACGG---CAGGCAACCGGTATGTTGCGCTTCGCCGCCA 6871 Query 53878 CGAATAGGACTGCCAATCCCACGGATA-GCCCCGACGTCAAAGCCGATACCCGCACGTTT 53936 || || ||||| | | | ||||| | |||| ||| | ||| || || || |||| Sbjct 6870 CGTATCTCGCTGCCCAGCGCGCGGATGCGGCCCG-CGTTGACGCCTATGCCGGCGCGTTG 6812 Query 53937 GGACACATAGTCAACGATGGTCTTGGCCGTTGCGTTGATAGAGTCCAGGGTGTCACCAGT 53996 || ||||| | ||||| | ||| ||||| ||||| ||||||| ||||| || Sbjct 6811 CGAGACATACTTCACGATCGCGCTGGTGGTTGCATTGATGCTGTCCAGGCTGTCATCACA 6752 Query 53997 TTTGATCAGGACACAGGAACTGAACTGACGGGTAGGAGTACGAACACCTGCCATAATCGG 54056 | |||||| || ||||| |||||||| || ||||||||||| ||||| ||||| || || Sbjct 6751 CTCGATCAGTACGCAGGAGCTGAACTGGCGCGTAGGAGTACGCACACCGGCCATGATAGG 6692 Query 54057 GGTGGGAAG 54065 || || || Sbjct 6691 CGTAGGCAG 6683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505432544064880