Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1314 131 4e-25 seq315 125 2e-23 seq479 111 4e-19 >seq1314 Length=13110 Score = 131 bits (144), Expect = 4e-25 Identities = 141/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||||| ||||||||| | | || | || |||||||| ||||| ||||| |||| Sbjct 2067 CCTTTTGGATGTTGTAGTCCGAGAGCGTGCGACCGTCTTCCAGTTGCTTGCCGGCAAAGA 2126 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | |||||||||||||| ||| ||| ||||| ||||||||||| |||||||| | Sbjct 2127 TCAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTCTGCTTCACATTGT 2186 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 | | | |||| | | || || |||| |||||||||||| || || | || ||||||| Sbjct 2187 CAATGCTGTCGGACGGCTCCACGTCCAGCGTGATCGTCTTGCCTGTCAACGTCTTCACAA 2246 Query 199620 AAATTTG 199626 | || || Sbjct 2247 AGATCTG 2253 >seq315 Length=59289 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || ||||||||||| |||| ||| |||||| || || | || ||| Sbjct 38281 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTATAGTCACTCAGCGTACGGCCGTCT 38340 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||| ||||| || ||||||||||| || || || || ||| Sbjct 38341 TCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 38400 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||||| || | | ||| | | || || |||| |||||||||| Sbjct 38401 TGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTC 38460 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || ||||| ||||| || Sbjct 38461 TTCCCTGTCAACGTCTTCACGAAAATCTG 38489 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || ||||| ||||| |||| ||||||||| || || | || ||| Sbjct 38584 AGCACCAGGTGCAGCGTCGATTCCTTCTGGATGTTGTAGTCGCTCAGCGTACGGCCGTCT 38643 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||| ||||| || ||||||||||| || || || || ||| Sbjct 38644 TCCAGCTGCTTGCCGGCAAAGATCAGCCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCC 38703 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||||| || | | ||| | | || || |||| |||||||||| Sbjct 38704 TGGATCTTCTGCTTCACATTGTCAATCGAGTCAGACGGCTCCACGTCCAGCGTGATCGTC 38763 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || ||||| ||||| || Sbjct 38764 TTCCCTGTCAACGTCTTCACGAAAATCTG 38792 >seq479 Length=33999 Score = 111 bits (122), Expect = 4e-19 Identities = 91/111 (82%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || ||||||||||| |||| ||||||||| | || ||| | ||||| Sbjct 31148 AGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGACAGAGTACGACCATCC 31207 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || |||||||| || ||||||||||||||||||||||| || ||||||| Sbjct 31208 TCTAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGCGGAATTCCT 31258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178781380906961