Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq69 233 2e-56
seq5172 147 2e-30
seq315 127 2e-24
seq1314 95.1 1e-14
seq479 95.1 1e-14
>seq69
Length=63067
Score = 233 bits (258), Expect = 2e-56
Identities = 426/613 (69%), Gaps = 18/613 (3%)
Strand=Plus/Minus
Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946
|||| | ||| |||||||| |||| |||||| || | |||||| ||||| ||
Sbjct 13115 ACATGAGGCACGCAAAGTCCGTGTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGA 13056
Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006
| | | ||| |||||||| ||||| || || |||||||| || | | ||| |||||
Sbjct 13055 AGCTGAGGCCAGGCATGAGACCGCGCTTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCG 12996
Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066
| ||||| | ||| ||||| | || || |||| ||| ||||| || ||| | | |||
Sbjct 12995 AGAAGAAAATGCCTTCGACCGAGGCAAATGCCAGCAGCCGCTCCGCGTACGAAGATACTT 12936
Query 133067 TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTG--ACGCACGGCATCGTTTC 133124
| || ||| |||||||| | ||| ||||||| || ||||| || || ||
Sbjct 12935 GTGGGTCGCACCACTTGAGCGCCCAATTGGC--TTTCTTTCGAACACACGGGATGGTCTC 12878
Query 133125 GATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC----ACGTAGGTGTCGATGA 133180
|| ||| || | || | | || |||| | | | | ||| ||||| ||||
Sbjct 12877 AATCGCGCGCAGAA---GGTGATCCTTCTCCGTCGC-CTCTTTAATGTACGTGTCAATGA 12822
Query 133181 GGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACC 133240
| |||||| | ||||||||| | ||| || || ||||| || ||||| ||||||||||
Sbjct 12821 GCAGCGAATAGACTTCCGAGTGGATGTTTTCAATCGCGATCTGGAAGCCATAAAAGCACC 12762
Query 133241 GCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC--GACCAGATTTTCGTTGACGAT 133298
| || || ||| |||||||| | || ||| | || | ||||||| ||||| || ||
Sbjct 12761 GAGCTTCCGGCACTTGCACTTCAT-TGCTAAA-GTTCATGGCCAGATTCTCGTTCACAAT 12704
Query 133299 GCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTT 133358
||| || ||||| || || ||||| ||||| |||||||| || || ||||| ||||| |
Sbjct 12703 GCCATCACTGGCTGCAAAGAAGGCGAGCACATGCTTGATAAAGTGACGCTCATTGTCCGT 12644
Query 133359 CAAGCGCTCCCAGTCGCGCGTGTCCTTGGA-CAGGTCCACCTCCTCGACGGTCCAAAACG 133417
| | | ||||||| | | | | || | || ||| | |||||| | ||||| ||||
Sbjct 12643 GAGGTTCGCCCAGTC-CTTGAGATCGTGCACCAAGTCTAGCTCCTCAGCAGTCCAGAACG 12585
Query 133418 ACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAA 133477
| || || || || |||||||| ||||| ||| | ||| || ||||| | |||||
Sbjct 12584 AAGCTTCCGCCTTCTTGTACATCTGCCACACGTCGTGCTCTTGGATCGGAAAGAGCACAA 12525
Query 133478 ACCGGCGGGGGTT 133490
| ||| ||||||
Sbjct 12524 AGCGGTTGGGGTT 12512
>seq5172
Length=1594
Score = 147 bits (162), Expect = 2e-30
Identities = 421/644 (65%), Gaps = 14/644 (2%)
Strand=Plus/Plus
Query 132603 TTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAG 132662
||||||||| || || ||| ||||| ||||| ||||| || | || ||||| ||
Sbjct 961 TTTTTGATACTCAGAGACACGTTTTTCAAAGAAATTGGTTTTGCCTTGTAATGAAATCAG 1020
Query 132663 CGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAG-GTCGACGA 132721
|||||| || ||||| || | || || |||| | ||| ||| | |
Sbjct 1021 TTCCATAAAGTCAAAGGGATTTTGAGCGTGATACATTTTGGGCTCACCCAGTGTC-AGTA 1079
Query 132722 GCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCA 132781
|||| | ||| || || ||||||||||| || ||| || || | || | ||
Sbjct 1080 GCAGGCGGTCAGCAACAAACTCGATGTACTGTTTCATCAGGTCAGCGTTCATACCGATCA 1139
Query 132782 GACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGA 132841
| || || |||| || ||||||| ||| || || || || |||||||||| | |
Sbjct 1140 GGCGTACAGGCAAGGCATCGGTGACAAATTCCTGTTCAATTGCAACCGCGTCGGCAATAA 1199
Query 132842 TTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAA---TGCTTGAACATCAAGCAAG 132898
| || | | ||| | || ||| | | ||| |||| | ||| |||||| |
Sbjct 1200 TCTCACGCAGGCGTTCAGC---CGGGAGCTTATTTAAAAGCTGCTGGTACAGCAAGCAGG 1256
Query 132899 CAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGG 132958
| ||||| ||||| ||| || || | || || ||||| || ||| ||||||| |
Sbjct 1257 CGAAGTCAGTATGCATGCCTTCATCGCGAGAGATCAGTTCATTTGAAAAACTCAAGCCCG 1316
Query 132959 GCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGC 133018
|||| ||||| || ||||| ||||| || |||| | ||| || || |||||||| | ||
Sbjct 1317 GCATCAGGCCACGCTTTTTAAGCCAGAAAATGGAGCAGAAGCTACCAGAAAAGAAAATGC 1376
Query 133019 CCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCC 133078
| || | ||| || || || || |||||||| | || || ||| || ||||||
Sbjct 1377 CTTCAATGGCGGCAAAGGCGACAAGGCGCTCAGCAAAGCTGCCTTTTT------CGATCC 1430
Query 133079 AGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACA 133138
||||||| ||||| || || || ||||||| |||| ||||| || ||| ||||
Sbjct 1431 AGCGCAGAGCCCACTCAGCTTTGCGGGTGACGCAAGGCAGGGTTTCAATCGCGCGGAACA 1490
Query 133139 AACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCG 133198
|| ||| || | | || | || || || | || | || |||| |
Sbjct 1491 GGCGATTTTTTTCACTTGTGTCGCGAATATAAGTATCCAGCAGTAGAGCGTAGGTTTCAG 1550
Query 133199 AGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGC 133242
| || | ||||||||| ||| ||||| |||||||| || |||
Sbjct 1551 AATGGATGTTCTCCATCATGATCTGAAAACCGTAAAAACAACGC 1594
>seq315
Length=59289
Score = 127 bits (140), Expect = 2e-24
Identities = 171/233 (73%), Gaps = 4/233 (2%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || ||| | || || || || ||||| | ||||| ||| |
Sbjct 38798 AAGATGCAGATTTTCGTGAAGACGTTGACAGGGAAGACGATCACGCTGGACGTGGAGCCG 38739
Query 38301 ACCGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-G 38358
| ||| | || || | | || | || |||| ||||| ||||| || |||||| |
Sbjct 38738 TCTGACTCGATTGACAATG-TGAAGCAGAAGATCCAGGACAAGGAGGGCAT-CCCGCCTG 38681
Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418
|||| |||||||| || | || ||||| |||||||| |||| || || || | |||||
Sbjct 38680 ACCAGCAGCGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGTACGCTGAGCGACT 38621
Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||||||| |||||| |||||||||| ||||||| || || | || |||
Sbjct 38620 ACAACATCCAGAAGGAATCGACGCTGCACCTGGTGCTTCGCCTGCGCGGTGGC 38568
>seq1314
Length=13110
Score = 95.1 bits (104), Expect = 1e-14
Identities = 135/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || ||| | || ||||| || ||||| | ||||| ||| | ||
Sbjct 2256 ATGCAGATCTTTGTGAAGACGTTGACAGGCAAGACGATCACGCTGGACGTGGAGCCGTCC 2197
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||||| | | | | || | || || | || || || || ||||| | |||||
Sbjct 2196 GACAGCATTGACAATGTGAAGCAGAAGATTCAGGATAAGGAAGGCATTCCTCCTGACCAG 2137
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | || ||||| || ||||| |||| ||||| ||| |||||||||
Sbjct 2136 CAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGACGGTCGCACGCTCTCGGACTACAAC 2077
Query 38424 ATCCAAAAGG 38433
||||||||||
Sbjct 2076 ATCCAAAAGG 2067
>seq479
Length=33999
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405
|||||||| | ||||| ||||| ||||| | ||| ||||| ||||| || || | ||
Sbjct 31257 GGAATTCCGCCTGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTAGAGGATGGTCGT 31198
Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465
|| || |||||||||||||| ||||| |||||||||| ||||||| ||| || |
Sbjct 31197 ACTCTGTCGGACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGTCTGCGT 31138
Query 38466 GGCGG 38470
|||||
Sbjct 31137 GGCGG 31133
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500114761198720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |