Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq69 233 2e-56 seq5172 147 2e-30 seq315 127 2e-24 seq1314 95.1 1e-14 seq479 95.1 1e-14 >seq69 Length=63067 Score = 233 bits (258), Expect = 2e-56 Identities = 426/613 (69%), Gaps = 18/613 (3%) Strand=Plus/Minus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 |||| | ||| |||||||| |||| |||||| || | |||||| ||||| || Sbjct 13115 ACATGAGGCACGCAAAGTCCGTGTGCATGCCCTCATCTCGACTAATGAGCTCGTTCGAGA 13056 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | | | ||| |||||||| ||||| || || |||||||| || | | ||| ||||| Sbjct 13055 AGCTGAGGCCAGGCATGAGACCGCGCTTCTTCAGCCAAAAGATCGAGCAGAACGAGCCCG 12996 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 | ||||| | ||| ||||| | || || |||| ||| ||||| || ||| | | ||| Sbjct 12995 AGAAGAAAATGCCTTCGACCGAGGCAAATGCCAGCAGCCGCTCCGCGTACGAAGATACTT 12936 Query 133067 TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTG--ACGCACGGCATCGTTTC 133124 | || ||| |||||||| | ||| ||||||| || ||||| || || || Sbjct 12935 GTGGGTCGCACCACTTGAGCGCCCAATTGGC--TTTCTTTCGAACACACGGGATGGTCTC 12878 Query 133125 GATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC----ACGTAGGTGTCGATGA 133180 || ||| || | || | | || |||| | | | | ||| ||||| |||| Sbjct 12877 AATCGCGCGCAGAA---GGTGATCCTTCTCCGTCGC-CTCTTTAATGTACGTGTCAATGA 12822 Query 133181 GGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACC 133240 | |||||| | ||||||||| | ||| || || ||||| || ||||| |||||||||| Sbjct 12821 GCAGCGAATAGACTTCCGAGTGGATGTTTTCAATCGCGATCTGGAAGCCATAAAAGCACC 12762 Query 133241 GCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC--GACCAGATTTTCGTTGACGAT 133298 | || || ||| |||||||| | || ||| | || | ||||||| ||||| || || Sbjct 12761 GAGCTTCCGGCACTTGCACTTCAT-TGCTAAA-GTTCATGGCCAGATTCTCGTTCACAAT 12704 Query 133299 GCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTT 133358 ||| || ||||| || || ||||| ||||| |||||||| || || ||||| ||||| | Sbjct 12703 GCCATCACTGGCTGCAAAGAAGGCGAGCACATGCTTGATAAAGTGACGCTCATTGTCCGT 12644 Query 133359 CAAGCGCTCCCAGTCGCGCGTGTCCTTGGA-CAGGTCCACCTCCTCGACGGTCCAAAACG 133417 | | | ||||||| | | | | || | || ||| | |||||| | ||||| |||| Sbjct 12643 GAGGTTCGCCCAGTC-CTTGAGATCGTGCACCAAGTCTAGCTCCTCAGCAGTCCAGAACG 12585 Query 133418 ACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAA 133477 | || || || || |||||||| ||||| ||| | ||| || ||||| | ||||| Sbjct 12584 AAGCTTCCGCCTTCTTGTACATCTGCCACACGTCGTGCTCTTGGATCGGAAAGAGCACAA 12525 Query 133478 ACCGGCGGGGGTT 133490 | ||| |||||| Sbjct 12524 AGCGGTTGGGGTT 12512 >seq5172 Length=1594 Score = 147 bits (162), Expect = 2e-30 Identities = 421/644 (65%), Gaps = 14/644 (2%) Strand=Plus/Plus Query 132603 TTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAG 132662 ||||||||| || || ||| ||||| ||||| ||||| || | || ||||| || Sbjct 961 TTTTTGATACTCAGAGACACGTTTTTCAAAGAAATTGGTTTTGCCTTGTAATGAAATCAG 1020 Query 132663 CGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAG-GTCGACGA 132721 |||||| || ||||| || | || || |||| | ||| ||| | | Sbjct 1021 TTCCATAAAGTCAAAGGGATTTTGAGCGTGATACATTTTGGGCTCACCCAGTGTC-AGTA 1079 Query 132722 GCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCA 132781 |||| | ||| || || ||||||||||| || ||| || || | || | || Sbjct 1080 GCAGGCGGTCAGCAACAAACTCGATGTACTGTTTCATCAGGTCAGCGTTCATACCGATCA 1139 Query 132782 GACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGA 132841 | || || |||| || ||||||| ||| || || || || |||||||||| | | Sbjct 1140 GGCGTACAGGCAAGGCATCGGTGACAAATTCCTGTTCAATTGCAACCGCGTCGGCAATAA 1199 Query 132842 TTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAA---TGCTTGAACATCAAGCAAG 132898 | || | | ||| | || ||| | | ||| |||| | ||| |||||| | Sbjct 1200 TCTCACGCAGGCGTTCAGC---CGGGAGCTTATTTAAAAGCTGCTGGTACAGCAAGCAGG 1256 Query 132899 CAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGG 132958 | ||||| ||||| ||| || || | || || ||||| || ||| ||||||| | Sbjct 1257 CGAAGTCAGTATGCATGCCTTCATCGCGAGAGATCAGTTCATTTGAAAAACTCAAGCCCG 1316 Query 132959 GCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGC 133018 |||| ||||| || ||||| ||||| || |||| | ||| || || |||||||| | || Sbjct 1317 GCATCAGGCCACGCTTTTTAAGCCAGAAAATGGAGCAGAAGCTACCAGAAAAGAAAATGC 1376 Query 133019 CCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCC 133078 | || | ||| || || || || |||||||| | || || ||| || |||||| Sbjct 1377 CTTCAATGGCGGCAAAGGCGACAAGGCGCTCAGCAAAGCTGCCTTTTT------CGATCC 1430 Query 133079 AGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACA 133138 ||||||| ||||| || || || ||||||| |||| ||||| || ||| |||| Sbjct 1431 AGCGCAGAGCCCACTCAGCTTTGCGGGTGACGCAAGGCAGGGTTTCAATCGCGCGGAACA 1490 Query 133139 AACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCG 133198 || ||| || | | || | || || || | || | || |||| | Sbjct 1491 GGCGATTTTTTTCACTTGTGTCGCGAATATAAGTATCCAGCAGTAGAGCGTAGGTTTCAG 1550 Query 133199 AGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGC 133242 | || | ||||||||| ||| ||||| |||||||| || ||| Sbjct 1551 AATGGATGTTCTCCATCATGATCTGAAAACCGTAAAAACAACGC 1594 >seq315 Length=59289 Score = 127 bits (140), Expect = 2e-24 Identities = 171/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || ||| | || || || || ||||| | ||||| ||| | Sbjct 38798 AAGATGCAGATTTTCGTGAAGACGTTGACAGGGAAGACGATCACGCTGGACGTGGAGCCG 38739 Query 38301 ACCGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-G 38358 | ||| | || || | | || | || |||| ||||| ||||| || |||||| | Sbjct 38738 TCTGACTCGATTGACAATG-TGAAGCAGAAGATCCAGGACAAGGAGGGCAT-CCCGCCTG 38681 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| |||||||| || | || ||||| |||||||| |||| || || || | ||||| Sbjct 38680 ACCAGCAGCGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGTACGCTGAGCGACT 38621 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||| |||||| |||||||||| ||||||| || || | || ||| Sbjct 38620 ACAACATCCAGAAGGAATCGACGCTGCACCTGGTGCTTCGCCTGCGCGGTGGC 38568 >seq1314 Length=13110 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||| | || ||||| || ||||| | ||||| ||| | || Sbjct 2256 ATGCAGATCTTTGTGAAGACGTTGACAGGCAAGACGATCACGCTGGACGTGGAGCCGTCC 2197 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||||| | | | | || | || || | || || || || ||||| | ||||| Sbjct 2196 GACAGCATTGACAATGTGAAGCAGAAGATTCAGGATAAGGAAGGCATTCCTCCTGACCAG 2137 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || ||||| || ||||| |||| ||||| ||| ||||||||| Sbjct 2136 CAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGACGGTCGCACGCTCTCGGACTACAAC 2077 Query 38424 ATCCAAAAGG 38433 |||||||||| Sbjct 2076 ATCCAAAAGG 2067 >seq479 Length=33999 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 |||||||| | ||||| ||||| ||||| | ||| ||||| ||||| || || | || Sbjct 31257 GGAATTCCGCCTGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTAGAGGATGGTCGT 31198 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 || || |||||||||||||| ||||| |||||||||| ||||||| ||| || | Sbjct 31197 ACTCTGTCGGACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTTCGTCTGCGT 31138 Query 38466 GGCGG 38470 ||||| Sbjct 31137 GGCGG 31133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500114761198720