Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020 15-10-27] 9,283 sequences; 70,257,463 total letters Query= NC_014459.1 Length=59798 Score E Sequences producing significant alignments: (Bits) Value seq5850 84.2 8e-12 >seq5850 Length=1395 Score = 84.2 bits (92), Expect = 8e-12 Identities = 161/233 (69%), Gaps = 11/233 (5%) Strand=Plus/Plus Query 54816 ACCCGTAAGGGGGCGATCGACGCGAACGCCGGTGTG--CGGGGCCTGATTCCGGGCTCGA 54873 || ||||||||||||||| ||| ||||| ||| | || || || || || |||| Sbjct 1152 ACGCGTAAGGGGGCGATCCGGGCGG--GCCGGGGTGATCTCGGGCTCATCCCCGGGTCGA 1209 Query 54874 TGGGCACCTGTTCGTATGTCGTGACCGGCAAGGGTAATCCCGAGGCGTTGTGC---TCGG 54930 |||| ||| |||| || || ||| ||| ||| ||||| || | | |||| Sbjct 1210 TGGGTACCGGTTCCTACGTGGTGCGGGGCCTGGGCT---CCGAGTTGTCCTTCAACTCGG 1266 Query 54931 CGCCGCACGGTGCGGGCCGCCGGTTCTCGCGCACGAAGGCGCGCAAGCTGTTCACGGTCG 54990 || ||||||| ||||| || | | |||||||||||| |||| |||||| |||| Sbjct 1267 CGTCGCACGGGGCGGGACGGACGATGAGCCGCACGAAGGCGAAGAAGCGGTTCACCGTCG 1326 Query 54991 ACGACCTCGAGGCGCGTATGGCGGGCATCGAGTACCGCAAGGGCG-AGGCGTG 55042 ||||||| | | || | | | ||| |||| | ||||||| || |||||| Sbjct 1327 ACGACCTGGCGCGGCAGACGTCCGGCGTCGAATCGCGCAAGGACGCCGGCGTG 1379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191210919420960