Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hyaloperonospora_20arabidopsidis_20[genbank_20GCA_5F001414265.1_2020
15-10-27] 9,283 sequences; 70,257,463 total letters
Query= NC_014459.1
Length=59798
Score E
Sequences producing significant alignments: (Bits) Value
seq5850 84.2 8e-12
>seq5850
Length=1395
Score = 84.2 bits (92), Expect = 8e-12
Identities = 161/233 (69%), Gaps = 11/233 (5%)
Strand=Plus/Plus
Query 54816 ACCCGTAAGGGGGCGATCGACGCGAACGCCGGTGTG--CGGGGCCTGATTCCGGGCTCGA 54873
|| ||||||||||||||| ||| ||||| ||| | || || || || || ||||
Sbjct 1152 ACGCGTAAGGGGGCGATCCGGGCGG--GCCGGGGTGATCTCGGGCTCATCCCCGGGTCGA 1209
Query 54874 TGGGCACCTGTTCGTATGTCGTGACCGGCAAGGGTAATCCCGAGGCGTTGTGC---TCGG 54930
|||| ||| |||| || || ||| ||| ||| ||||| || | | ||||
Sbjct 1210 TGGGTACCGGTTCCTACGTGGTGCGGGGCCTGGGCT---CCGAGTTGTCCTTCAACTCGG 1266
Query 54931 CGCCGCACGGTGCGGGCCGCCGGTTCTCGCGCACGAAGGCGCGCAAGCTGTTCACGGTCG 54990
|| ||||||| ||||| || | | |||||||||||| |||| |||||| ||||
Sbjct 1267 CGTCGCACGGGGCGGGACGGACGATGAGCCGCACGAAGGCGAAGAAGCGGTTCACCGTCG 1326
Query 54991 ACGACCTCGAGGCGCGTATGGCGGGCATCGAGTACCGCAAGGGCG-AGGCGTG 55042
||||||| | | || | | | ||| |||| | ||||||| || ||||||
Sbjct 1327 ACGACCTGGCGCGGCAGACGTCCGGCGTCGAATCGCGCAAGGACGCCGGCGTG 1379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 191210919420960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |